View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_105 (Length: 238)
Name: NF16592_low_105
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_105 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42370354 - 42370578
Alignment:
| Q |
1 |
agagatgtttggccaaacaacaccatacataaaatatttcatttgatcctcttcannnnnnnctccacttttcttgcttgttagcatttaattttcgtca |
100 |
Q |
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| T |
42370354 |
agagatgtttggccaaacaacaccatacataaaatatttcatttgatcctcttcatttttttctccacttttcttgcttgttagcatttaattttcgtca |
42370453 |
T |
|
| Q |
101 |
atttataatggtaatattactggaatcgtaagtgagagaagtggtgaaatcaaaattaaagataaactctgtcatagtcaaaaccaaagatggatgcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42370454 |
gtttataatggtaatattactggaatcgtaagtgagagaagtggtgaaatcaaaattgaagataaactctgtcatagtcaaaaccaaagatggatgcttt |
42370553 |
T |
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| Q |
201 |
cttgaagggatttccacaccttttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
42370554 |
cttgaagggatttccacaccttttt |
42370578 |
T |
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