View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_108 (Length: 229)
Name: NF16592_low_108
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_108 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17163837 - 17164066
Alignment:
| Q |
1 |
tttatctcgagtcagaaactctcaaaatagccttttcaaatatcacatgttcatattattaattgcttagttaaagatttattcaggcagtcc-aaaaat |
99 |
Q |
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| T |
17163837 |
tttatctcgagtccgaaactctcaaaatagccttttcaaatatcacatgttcatattattaattgcttagttaaagatttattcaggcagtccaaaaaat |
17163936 |
T |
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| Q |
100 |
taaaaaattataatattagatcatcnnnnnnnttaactaagctcgttcttttatttttaaaacaagatgtctttatttgaccttactctatctttgtcta |
199 |
Q |
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| T |
17163937 |
taaaagattataatattagatcatcaaaaaaattaattaagctcgttcttttatttttaaaataagatgtctttatttgaccttactctatctttgtcta |
17164036 |
T |
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| Q |
200 |
tatttccagtctatactttcgtttataaat |
229 |
Q |
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| T |
17164037 |
tatttccaatctatcctttagtttataaat |
17164066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 17160783 - 17160877
Alignment:
| Q |
5 |
tctcgagtcagaaactctcaaaatagccttttcaaatatcacatgttcatattattaattgcttagttaaagatttattcaggcagtccaaaaattaa |
102 |
Q |
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| T |
17160783 |
tctcgagtcagaaactctcaaattatccatttcaaatatcacatgttcatatta---attggttagttaaaaatttattcagtttgcccaaaaattaa |
17160877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 17156928 - 17156960
Alignment:
| Q |
72 |
taaagatttattcaggcagtccaaaaattaaaa |
104 |
Q |
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| T |
17156928 |
taaagatttattcaggctgtccaaaaattaaaa |
17156960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 25231326 - 25231248
Alignment:
| Q |
134 |
aactaagctcgttcttttatttttaaaacaagatgtctttatttgaccttactctatctttgtctatatttccagtcta |
212 |
Q |
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| T |
25231326 |
aactaagcacgttctttaattttttaaataagttgtctctatttgaccttactctatatttgtctatatttccagtcta |
25231248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 25226169 - 25226099
Alignment:
| Q |
134 |
aactaagctcgttcttttatttttaaaacaagatgtctttatttgaccttactctatctttgtctatattt |
204 |
Q |
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| T |
25226169 |
aactaagcacgttctttcattttttaaataagctgtctgtatttgaccttattctatttttgtttatattt |
25226099 |
T |
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