View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_109 (Length: 228)
Name: NF16592_low_109
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_109 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 45280764 - 45280957
Alignment:
| Q |
18 |
cacaaatggtgtgtggtatactacatcttttggatctagggcgattgttaggtaacctttaatgatttaatgtgatgtacttatggttagttgtataact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45280764 |
cacaaatggtgtgtggtatactacatcttttggatctagggcgattgttaggtaacctttaatgatttaatgtgatgtacttatggttagttgtataact |
45280863 |
T |
|
| Q |
118 |
tgccttaaatttaaagcaatatatatggttaaaaactattgaaaaaatggtgatgtttcaaattcaatcactacgtaatgcgagatctgatctgtg |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45280864 |
tgccttaaatttaaagca--atatatggttaaaaactattgaaaaaatggtgatgtttcaaattcaatcactacgtaatgcgagatctgatctgtg |
45280957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University