View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_112 (Length: 220)
Name: NF16592_low_112
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_112 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 36170677 - 36170486
Alignment:
| Q |
13 |
catcacatgcaacccacaaaacatagaacacatgctcaaaacccgttttgataactacccaaaaggaaaaccattctctacaatccttggtgatcttctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36170677 |
catcacatgcaacccacaaaacatagaacacatgctcaaaacccgttttgataactacccaaaaggaaaaccattctctacaatccttggtgatcttctt |
36170578 |
T |
|
| Q |
113 |
ggtaatggaatatttaacgttgatggtgtttcatggaacttccaacgtaaaatggcgagtctcgaactcacgagtgtaacggtacgttccta |
204 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
36170577 |
ggtaatggaatatttaacgttgacggtgtttcatggaactttcaacgtaaaatggcaagtcttgaactcacaagtgtaacggtacgttccta |
36170486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 37672138 - 37672032
Alignment:
| Q |
98 |
cttggtgatcttcttggtaatggaatatttaacgttgatggtgtttcatggaacttccaacgtaaaatggcgagtctcgaactcacgagtgtaacggtac |
197 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||| |
|
|
| T |
37672138 |
cttggtgatcttcttgatgatggaatatttaacgttgatggtgtttcatggaacttccaacgtaaaatggcaagcctagaactcacaagtgtaacggtac |
37672039 |
T |
|
| Q |
198 |
gttccta |
204 |
Q |
| |
|
||||||| |
|
|
| T |
37672038 |
gttccta |
37672032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 37672141 - 37672230
Alignment:
| Q |
13 |
catcacatgcaacccacaaaacatagaacacatgctcaaaacccgttttgataactacccaaaaggaaaacc----attctctacaatcc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
37672141 |
catcacatgcaacccacaaaacatagaacacatgctcaaaacctgtttggataacaatccaaaaggaaaaccaaccattctctacaatcc |
37672230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 19931851 - 19931897
Alignment:
| Q |
68 |
tacccaaaaggaaaaccattctctacaatccttggtgatcttcttgg |
114 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
19931851 |
taccctaaaggtaaacaattctctacaatccttggtgatcttcttgg |
19931897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University