View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_low_114 (Length: 214)

Name: NF16592_low_114
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_low_114
NF16592_low_114
[»] chr5 (10 HSPs)
chr5 (22-194)||(10599517-10599689)
chr5 (22-194)||(10603182-10603354)
chr5 (42-163)||(7191454-7191575)
chr5 (27-88)||(10590141-10590202)
chr5 (27-88)||(10579441-10579502)
chr5 (27-163)||(10661724-10661860)
chr5 (53-98)||(10594218-10594263)
chr5 (42-95)||(10748722-10748775)
chr5 (46-178)||(9837952-9838084)
chr5 (41-99)||(10218429-10218487)
[»] chr6 (4 HSPs)
chr6 (53-161)||(12930736-12930844)
chr6 (53-94)||(12898025-12898066)
chr6 (53-94)||(12905647-12905688)
chr6 (53-94)||(12956538-12956579)
[»] chr2 (1 HSPs)
chr2 (42-94)||(17925114-17925166)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 10599517 - 10599689
Alignment:
Q  22 aagttatctcagttgcagcgaataactttattggctctcttccacccaatatgttccacactctccccaatctccaatattttacggtcggatcaaataa 121  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10599517 aagttatctcagttgcagcgaataactttagtggctctcttccacccaatatgttctacactctccccaatctccaatattttacggtcggatcaaataa 10599616  T
Q  122 attctcaggtcgaatccctacttcaatttcaaatgcttcttctttgacattatttgaaatcggtgacaaccat 194  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10599617 attctcaggtccaatccctacttcaatttcaaatgcttcttctttgacattatttgaaatcggtgacaaccat 10599689  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 10603182 - 10603354
Alignment:
Q  22 aagttatctcagttgcagcgaataactttattggctctcttccacccaatatgttccacactctccccaatctccaatattttacggtcggatcaaataa 121  Q
    |||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |    
T  10603182 aagtgatctcagttgcagtgaatagctttagtggctctcttccacccaatatgttccacactctccccaatctccaatattttacagttggatcaaatca 10603281  T
Q  122 attctcaggtcgaatccctacttcaatttcaaatgcttcttctttgacattatttgaaatcggtgacaaccat 194  Q
    ||||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  10603282 attcttaggtccaatccccacttcaatttcgaatgcttcttctttgacattatttgaaattggtgacaaccat 10603354  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 7191454 - 7191575
Alignment:
Q  42 aataactttattggctctcttccacccaatatgttccacactctccccaatctccaatattttacggtcggatcaaataaattctcaggtcgaatcccta 141  Q
    ||||| |||| ||| ||||||||||||||||||||| |||| ||| ||||||| ||||||||  |  |||||  |||| |||||||||||  ||||||||    
T  7191454 aataattttaatggatctcttccacccaatatgttcaacaccctctccaatcttcaatatttagcaatcggaggaaatcaattctcaggtacaatcccta 7191553  T
Q  142 cttcaatttcaaatgcttcttc 163  Q
     ||| |||||||||||||||||    
T  7191554 tttccatttcaaatgcttcttc 7191575  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 10590202 - 10590141
Alignment:
Q  27 atctcagttgcagcgaataactttattggctctcttccacccaatatgttccacactctccc 88  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||    
T  10590202 atctcagttgcagcgaatagctttagtggctctcttccgcccaatatgttcaacactctccc 10590141  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 10579441 - 10579502
Alignment:
Q  27 atctcagttgcagcgaataactttattggctctcttccacccaatatgttccacactctccc 88  Q
    |||||||||| |||||||| ||||| ||| ||||||||||||||||||||| ||||||||||    
T  10579441 atctcagttgaagcgaatagctttagtggttctcttccacccaatatgttcaacactctccc 10579502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 10661860 - 10661724
Alignment:
Q  27 atctcagttgcagcgaataactttattggctctcttccacccaatatgttccacactctccccaatctccaatattttacggtcggatcaaataaattct 126  Q
    |||||||||| | | ||| | |||| ||| ||||||||| ||||||||||| |||| ||| ||||||| ||||||||  |  |||||  |||| |||| |    
T  10661860 atctcagttggacccaatgattttaatggatctcttccatccaatatgttcaacaccctctccaatcttcaatatttcgcaatcggaagaaatgaatttt 10661761  T
Q  127 caggtcgaatccctacttcaatttcaaatgcttcttc 163  Q
    |||||  |||||||| ||| ||| |||||||||||||    
T  10661760 caggtacaatccctatttccattgcaaatgcttcttc 10661724  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 10594218 - 10594263
Alignment:
Q  53 tggctctcttccacccaatatgttccacactctccccaatctccaa 98  Q
    |||||||||||||||| | |||||||| ||||||||||||||||||    
T  10594218 tggctctcttccacccgacatgttccaaactctccccaatctccaa 10594263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 10748775 - 10748722
Alignment:
Q  42 aataactttattggctctcttccacccaatatgttccacactctccccaatctc 95  Q
    ||||| |||||||||||||||||| ||||  ||||| |||||||||||||||||    
T  10748775 aataaatttattggctctcttccatccaacttgttcaacactctccccaatctc 10748722  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 9838084 - 9837952
Alignment:
Q  46 actttattggctctcttccacccaatatgttccacactctccccaatctccaatattttacggtcggatcaaataaattctcaggtcgaatccctacttc 145  Q
    |||||| ||||||||||||| | ||||||||||| |||||||| ||||||| || ||||    | |||   |||||| ||| ||||  |||||| |||||    
T  9838084 actttagtggctctcttccatcaaatatgttccaaactctccctaatctccgatcttttgaaataggagggaataaaatcttaggttcaatcccaacttc 9837985  T
Q  146 aatttcaaatgcttcttctttgacattatttga 178  Q
     |||  |||||||||| ||||||||| ||||||    
T  9837984 cattgtaaatgcttctactttgacatcatttga 9837952  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 10218487 - 10218429
Alignment:
Q  41 gaataactttattggctctcttccacccaatatgttccacactctccccaatctccaat 99  Q
    ||||||||||  |||||||||||||||||| ||||| ||  | ||||||||||||||||    
T  10218487 gaataacttttatggctctcttccacccaacatgtttcatgccctccccaatctccaat 10218429  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 12930736 - 12930844
Alignment:
Q  53 tggctctcttccacccaatatgttccacactctccccaatctccaatattttacggtcggatcaaataaattctcaggtcgaatccctacttcaatttca 152  Q
    ||||||| |||||||||| ||||||||||| ||||||||| | |||   ||  |  | | | ||||| |||||||||||| |||||||||||| ||| ||    
T  12930736 tggctcttttccacccaacatgttccacaccctccccaatattcaaatattcgcttttgcagcaaatcaattctcaggtccaatccctacttcgattgca 12930835  T
Q  153 aatgcttct 161  Q
    |||||||||    
T  12930836 aatgcttct 12930844  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 12898025 - 12898066
Alignment:
Q  53 tggctctcttccacccaatatgttccacactctccccaatct 94  Q
    ||||||| |||||||||| ||||||||||| |||||||||||    
T  12898025 tggctcttttccacccaacatgttccacaccctccccaatct 12898066  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 12905647 - 12905688
Alignment:
Q  53 tggctctcttccacccaatatgttccacactctccccaatct 94  Q
    ||||||| |||||||||| ||||||||||| |||||||||||    
T  12905647 tggctcttttccacccaacatgttccacaccctccccaatct 12905688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 12956538 - 12956579
Alignment:
Q  53 tggctctcttccacccaatatgttccacactctccccaatct 94  Q
    ||||||| |||||||||| ||||||||||| |||||||||||    
T  12956538 tggctcttttccacccaacatgttccacaccctccccaatct 12956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 17925166 - 17925114
Alignment:
Q  42 aataactttattggctctcttccacccaatatgttccacactctccccaatct 94  Q
    ||||||||| | |||||| |||||||||| || |||||||| |||||||||||    
T  17925166 aataactttctcggctcttttccacccaacatcttccacaccctccccaatct 17925114  T

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