View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_12 (Length: 553)
Name: NF16592_low_12
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 9 - 537
Target Start/End: Original strand, 36273195 - 36273724
Alignment:
| Q |
9 |
gagatgaattactcacgtgtgattaatttagatgtgataggaagggaacatgataaagaaaagatcataaagcatttgattcaacatgataattatcaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36273195 |
gagatgaattactcacgtgtgattaattcagatgtgataggaagggaacatgataaagaaaagatcataaagcatttgattcaacatgataattatcaaa |
36273294 |
T |
|
| Q |
109 |
atttct--gttgtccctattgtggggtttcggggcgtgggaaagactacacttgcaaagcttgtgttcaataatgagagaataaatgagtattttttatc |
206 |
Q |
| |
|
|| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36273295 |
atctctctgttgtccctattgtggggtttcggagcgtgggaaagactacacttgcaaagcttgtgttcaatgatgagagaataaatgagtattttttatc |
36273394 |
T |
|
| Q |
207 |
caagatgtgggtgtgtgtttcagaaagctttgacgttaggcaactcgtaattaaaatcatcagttctgttaacgattcaactcatactgctactgccgct |
306 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36273395 |
caagatgtgggtgt--gtttcagaaagctttgacgttaggcaactcgtaattaaaatcatcagttctgttaacgattcaactcatgctgctactgccgct |
36273492 |
T |
|
| Q |
307 |
tatagacaaaattatagagatttagatattgaggaactaaaaaatcgtgtaaaagataaacttaaaggtaaaaa-ttcctactcgtcttggatggcatgt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
36273493 |
tatagacaaaattatagagatttagatattgaggaactaaaaaatcgtgtaaaagataaacttaaaggtaaaaagttcctactcgtcttggacggcatgt |
36273592 |
T |
|
| Q |
406 |
ggaatgaagactatgatcaatgggctaaggtgagagatttagtaagagtaggtgctgcaggaagtaaaatcttggtgactacttctagtcactcggttgc |
505 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
36273593 |
ggaatgaacactatgatcaatgggctaaggtgagagatttagtaagagtaggtgctgcaggaagtaaaattttagtgactacttctagtcactcggttgc |
36273692 |
T |
|
| Q |
506 |
ttccatgatgggcaccatttcatcacacattt |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36273693 |
ttccatgatgggcaccatttcatcacacattt |
36273724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 49351816 - 49351866
Alignment:
| Q |
26 |
tgtgattaatttagatgtgataggaagggaacatgataaagaaaagatcat |
76 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
49351816 |
tgtgattgattctgatgtgataggaagggaacatgataaacaaaaaatcat |
49351866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University