View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_120 (Length: 203)
Name: NF16592_low_120
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 17048330 - 17048528
Alignment:
| Q |
9 |
gacatcatcaattaaaggcaaagttttcaaatatgaatcaaatattctcaaggataattttgatgtgtttgtccttcaaacaatgactatctcatttctc |
108 |
Q |
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| T |
17048330 |
gacattatcaattaa-ggtaaagttttcaaatatgaatcaaatattctcaaggataattttgatgtgttggtccttcaaacaatgactatctcatttctc |
17048428 |
T |
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| Q |
109 |
tcatatataaggacctaagcaatttnnnnnnnnnngac------acacttaaacaattcttacaaacttagtatcttcgaatttcaaaagcacacaaaca |
202 |
Q |
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| T |
17048429 |
tcatatataaggacctaagcaatttaaagaaaaaagacacacaaacacttaaaaaattcttacaaacttagtatcttcgaatttcaaaagcacacaaaca |
17048528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 17048526 - 17048566
Alignment:
| Q |
147 |
acacttaaacaattcttacaaacttagtatcttcgaatttc |
187 |
Q |
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| T |
17048526 |
acacttaaacaattcttacaaacttagtatcttcgaatttc |
17048566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 12843004 - 12842957
Alignment:
| Q |
82 |
cttcaaacaatgactatctcatttctctcatatataaggacctaagca |
129 |
Q |
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| T |
12843004 |
cttcaaacaatgactctctcatttctctcatatataaggacctgagca |
12842957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 20706643 - 20706596
Alignment:
| Q |
82 |
cttcaaacaatgactatctcatttctctcatatataaggacctaagca |
129 |
Q |
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| T |
20706643 |
cttcaaacaacgactctctcatttctctccaatataaggacctaagca |
20706596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 16687769 - 16687809
Alignment:
| Q |
147 |
acacttaaacaattcttacaaacttagtatcttcgaatttc |
187 |
Q |
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| T |
16687769 |
acacttaaaaaattcttacaaacttagtatcttagaatttc |
16687809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 18114681 - 18114577
Alignment:
| Q |
19 |
attaaaggcaaagttttcaaatatgaatcaaatattctcaaggataattttgatgtgtttgtc--cttcaaacaatgactatctcatttctctcatatat |
116 |
Q |
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| T |
18114681 |
attagaggcaaagttttcaaatacga-tcaaagcttctcaaggacgaatttgatgcgttggcaatcttcaaacaatgactttctcatttctctcctatac |
18114583 |
T |
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| Q |
117 |
aaggac |
122 |
Q |
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|||||| |
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| T |
18114582 |
aaggac |
18114577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 19121704 - 19121744
Alignment:
| Q |
147 |
acacttaaacaattcttacaaacttagtatcttcgaatttc |
187 |
Q |
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| T |
19121704 |
acacttagaaaattcttacaaacttagtatcttagaatttc |
19121744 |
T |
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