View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_122 (Length: 202)
Name: NF16592_low_122
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_122 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 24046312 - 24046142
Alignment:
| Q |
16 |
caccttgaacaccagtaaggttagaaatattagctctttgaaccaaagaagcaatctgtttacatgccaacgaaatactattcaaaacaatagtaagttc |
115 |
Q |
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| T |
24046312 |
caccttgaacaccagtaaggttagaaatattagctctttgaaccaaagaagcaatctgtttacatgccaacgaaatactattcaaaacaatagtaagttc |
24046213 |
T |
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| Q |
116 |
agcatcaataacccctgtttgttcttgcttcaacaaccaactagtcaatgttataagctcataactacttc |
186 |
Q |
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| T |
24046212 |
agcatcaataacccctgtttgttcttgcttcaacaaccaactagtcaatgttataagctcataactacttc |
24046142 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 24069042 - 24068980
Alignment:
| Q |
33 |
aggttagaaatattagctctttgaaccaaagaagcaatctgtttacatgccaacgaaatacta |
95 |
Q |
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| T |
24069042 |
aggttagaaatattagctatttgaatcaaagaaacaatttgcttacatgccatggaaatacta |
24068980 |
T |
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