View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_low_15 (Length: 543)

Name: NF16592_low_15
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_low_15
NF16592_low_15
[»] chr3 (14 HSPs)
chr3 (262-524)||(10591864-10592126)
chr3 (17-165)||(9980965-9981113)
chr3 (28-165)||(10360144-10360281)
chr3 (193-264)||(10591733-10591805)
chr3 (112-165)||(10584533-10584586)
chr3 (159-200)||(10584618-10584659)
chr3 (28-75)||(10264483-10264530)
chr3 (17-52)||(10584471-10584506)
chr3 (17-65)||(10035589-10035637)
chr3 (159-190)||(9981145-9981176)
chr3 (159-190)||(10360081-10360112)
chr3 (114-151)||(10035653-10035690)
chr3 (17-65)||(10130514-10130562)
chr3 (372-428)||(10429939-10429995)
[»] scaffold0083 (2 HSPs)
scaffold0083 (17-165)||(54024-54172)
scaffold0083 (159-190)||(53961-53992)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 262 - 524
Target Start/End: Original strand, 10591864 - 10592126
Alignment:
Q  262 aacccgattttgctatcctataatctcctgtattatactattgtaaaccttattactaacatatccactaaatcatgcttaaatcataaggagtttatat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591864 aacccgattttgctatcctataatctcctgtattatactattgtaaaccttattactaacatatccactaaatcatgcttaaatcataaggagtttatat 10591963  T
Q  362 tttaaaagtcaaaagattgagttcaaagtcagacagaagaaaatgtactatgttggtacaattttgaagatgtaaattattggtgatattttgatttgaa 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10591964 tttaaaagtcaaaagattgagttcaaagtcagacagaagaaaatgtactatgttggtacaattttgaagacgtaaattattggtgatattttgatttgaa 10592063  T
Q  462 gtatctttctattaaatttggatgttactagtttagcaacttgctattttctcacaatgacct 524  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10592064 gtatctttctattaaatgtggatgttactagtttagcaacttgctattttctcacaatgacct 10592126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 9980965 - 9981113
Alignment:
Q  17 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcttcca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9980965 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcatcca 9981064  T
Q  117 ttgattgccacaagatttaatttacttagctgctaatagtgagtttgta 165  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9981065 ttgattgccacaagatttaatttacttagctgctaatagtcagtttgta 9981113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 10360281 - 10360144
Alignment:
Q  28 ctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcttccattgattgccac 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10360281 ctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcagcttccattgattgccac 10360182  T
Q  128 aagatttaatttacttagctgctaatagtgagtttgta 165  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10360181 aagatttaatttacttagctgctaatagtcagtttgta 10360144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 10591733 - 10591805
Alignment:
Q  193 caatttataacatattctttagcatatattcttaatttgtacaatgcagta-ggtttatatgcaatttataac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10591733 caatttataacatattctttagcatatattcttaatttgtacaatgcagtagggtttatatgcaatttataac 10591805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 10584533 - 10584586
Alignment:
Q  112 ttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584533 ttccattgattgccacaagatttaatttacttagctgctaatagtgagtttgta 10584586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 10584618 - 10584659
Alignment:
Q  159 gtttgtaatattcttaatttgtaacattttttagcaatttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10584618 gtttgtaatattcttaatttgtaacattttttagcaatttat 10584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 10264483 - 10264530
Alignment:
Q  28 ctatgtggatgataatctgctcacttgatgaattgaagaaaactgctt 75  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  10264483 ctatgtggatgataatcagctcacttgatgaattgaagaaaaatgctt 10264530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 10584471 - 10584506
Alignment:
Q  17 caaaggcctagctatgtggatgataatctgctcact 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  10584471 caaaggcctagctatgtggatgataatctgctcact 10584506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10035589 - 10035637
Alignment:
Q  17 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 65  Q
    |||||||||||||||||||||||||||| ||||| ||  ||||||||||    
T  10035589 caaaggcctagctatgtggatgataatcagctcatttcgtgaattgaag 10035637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 190
Target Start/End: Original strand, 9981145 - 9981176
Alignment:
Q  159 gtttgtaatattcttaatttgtaacatttttt 190  Q
    ||||||||||||||||||||||||||||||||    
T  9981145 gtttgtaatattcttaatttgtaacatttttt 9981176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 190
Target Start/End: Complemental strand, 10360112 - 10360081
Alignment:
Q  159 gtttgtaatattcttaatttgtaacatttttt 190  Q
    ||||||||||||||||||||||||||||||||    
T  10360112 gtttgtaatattcttaatttgtaacatttttt 10360081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 10035653 - 10035690
Alignment:
Q  114 ccattgattgccacaagatttaatttacttagctgcta 151  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  10035653 ccattcattgccacaagatttaatttactcagctgcta 10035690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10130514 - 10130562
Alignment:
Q  17 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaag 65  Q
    |||||||| ||||||||||||||||||  ||||| ||| ||||||||||    
T  10130514 caaaggcccagctatgtggatgataattagctcatttggtgaattgaag 10130562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 10429995 - 10429939
Alignment:
Q  372 aaaagattgagttcaaagtcagacagaagaaaatgtactatgttggtacaattttga 428  Q
    ||||||||||||||||| ||||||||| || ||  ||||||||| ||||| ||||||    
T  10429995 aaaagattgagttcaaaatcagacagaggacaaaatactatgttagtacagttttga 10429939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 54172 - 54024
Alignment:
Q  17 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcttcca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54172 caaaggcctagctatgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcatcca 54073  T
Q  117 ttgattgccacaagatttaatttacttagctgctaatagtgagtttgta 165  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54072 ttgattgccacaagatttaatttacttagctgctaatagtcagtttgta 54024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 190
Target Start/End: Complemental strand, 53992 - 53961
Alignment:
Q  159 gtttgtaatattcttaatttgtaacatttttt 190  Q
    ||||||||||||||||||||||||||||||||    
T  53992 gtttgtaatattcttaatttgtaacatttttt 53961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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