View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_16 (Length: 539)
Name: NF16592_low_16
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 2 - 411
Target Start/End: Original strand, 2553292 - 2553701
Alignment:
| Q |
2 |
cgcgagaacttgataatcatcgtaaaaagattctttaatgattaatgatgcaataattgatccaacgttggatatcaaatgagagaatttaaatgtttgt |
101 |
Q |
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| T |
2553292 |
cgcgagaacttgataatcatcgtaaaaagattctttaatgattaatgatgcaataattgatccaacgttggatatcaaatgagagaatttaaatgtttgt |
2553391 |
T |
|
| Q |
102 |
gggagagagatcaaagaggtaaacgagcctctcaaaattgcagcctaggatttgaggataaacacttaaaaatcctaattttagggttaaatagtcaaca |
201 |
Q |
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| T |
2553392 |
gggagagagatcaaagaggtaaacgagcctctcaaaattgcagcctaggatttgaggataaacacttaaaaatcctaattttagggttaaatagtcaaca |
2553491 |
T |
|
| Q |
202 |
ttttctgacatggttgcatgtgcatgcgatcctcacatatgcgacatgcatataaaacacaccatctcaattaagatgttcattcgaatatgcgacgcaa |
301 |
Q |
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| T |
2553492 |
ttttctgacatggtcgcatgtgcatgcgatcctcacatatgcgacatgcatataaaacacaccatctcaattaagatgttcattcgaatatgcgacgcaa |
2553591 |
T |
|
| Q |
302 |
gataaaatcacaactttgtccagacttggctcgcacgtccgaatcctagtcatcacatatgcaatgttgcacaaaaatgaaaccttgaacccatgacatt |
401 |
Q |
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| T |
2553592 |
gataaaatcacaactttgtccagactttgctcgtacgtccgaatcctagtcatcacatatgcaatgttgcacaaaaatgaaaccttgaacccatgacatt |
2553691 |
T |
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| Q |
402 |
gttcccatat |
411 |
Q |
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| T |
2553692 |
gttcccatat |
2553701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 404 - 525
Target Start/End: Original strand, 2554414 - 2554535
Alignment:
| Q |
404 |
tcccatatgtgatccatataggcctcacgcatacgatgaagtctaaacccataaatctgcctgtgtttgctcacacatgcgagtaatgcctctttgcata |
503 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2554414 |
tcccatatgtgatccatataggcctcacgcatacaatgaagtctaaacccataaatttgcccgtgtttgctcacacatgcgagtaatgcctctttgcata |
2554513 |
T |
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| Q |
504 |
tgaaaagaacactatatatact |
525 |
Q |
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|||||||||||||||||||||| |
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| T |
2554514 |
tgaaaagaacactatatatact |
2554535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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