View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_low_2 (Length: 786)

Name: NF16592_low_2
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_low_2
NF16592_low_2
[»] chr1 (9 HSPs)
chr1 (413-769)||(17048770-17049122)
chr1 (1-243)||(17048530-17048772)
chr1 (98-287)||(34487684-34487875)
chr1 (116-272)||(26858723-26858882)
chr1 (91-272)||(40817632-40817817)
chr1 (115-272)||(11832956-11833115)
chr1 (236-272)||(15570991-15571027)
chr1 (1-37)||(17048477-17048513)
chr1 (188-255)||(24154680-24154748)
[»] chr2 (8 HSPs)
chr2 (9-357)||(27918816-27919161)
chr2 (101-208)||(29966874-29966981)
chr2 (7-209)||(35512509-35512710)
chr2 (7-57)||(29966761-29966811)
chr2 (195-272)||(26275625-26275704)
chr2 (117-210)||(22111271-22111365)
chr2 (69-212)||(18114283-18114428)
chr2 (121-271)||(16195691-16195844)
[»] chr4 (9 HSPs)
chr4 (47-351)||(17743019-17743322)
chr4 (7-211)||(21546169-21546373)
chr4 (15-153)||(16404702-16404840)
chr4 (7-94)||(16301294-16301380)
chr4 (121-262)||(6115655-6115797)
chr4 (7-154)||(23692239-23692383)
chr4 (7-57)||(17651590-17651640)
chr4 (188-242)||(19052740-19052794)
chr4 (351-401)||(44397402-44397452)
[»] chr7 (5 HSPs)
chr7 (120-401)||(39228174-39228457)
chr7 (8-271)||(4514468-4514736)
chr7 (121-255)||(4123375-4123511)
chr7 (188-263)||(24676974-24677051)
chr7 (351-400)||(3779535-3779584)
[»] chr6 (1 HSPs)
chr6 (7-176)||(14760506-14760675)
[»] chr5 (7 HSPs)
chr5 (7-293)||(25954920-25955206)
chr5 (1-89)||(16687773-16687861)
chr5 (359-402)||(30608855-30608898)
chr5 (188-272)||(15991132-15991216)
chr5 (351-405)||(90326-90380)
chr5 (69-135)||(17771899-17771964)
chr5 (323-376)||(11849282-11849335)
[»] chr3 (7 HSPs)
chr3 (188-272)||(2120990-2121076)
chr3 (7-89)||(19121714-19121796)
chr3 (163-334)||(13494757-13494930)
chr3 (351-400)||(13698556-13698605)
chr3 (361-402)||(7833636-7833677)
chr3 (361-402)||(7833719-7833760)
chr3 (4-57)||(13495003-13495056)
[»] chr8 (5 HSPs)
chr8 (188-295)||(3318525-3318633)
chr8 (116-247)||(12842639-12842772)
chr8 (71-272)||(20704116-20704319)
chr8 (116-252)||(33929183-33929320)
chr8 (7-125)||(35104383-35104500)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 413 - 769
Target Start/End: Original strand, 17048770 - 17049122
Alignment:
Q  413 taagaaatggaaggagactaacaatataaataaagcaacaaaaaaggctaagaaagtttttgtgcaaaagagtgatagaagaaattaacaagggaaatcc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17048770 taagaaatggaaggagactaacaatataaataaagcaacaaaaaaggctaagaaagtttttgtgcaaaagagtgatagaagaaattaacaagggaaatct 17048869  T
Q  513 aaagatcctat-ttggtggaggattatggggacaaacttgttgatagcacaaagacaaagataataaggagtctattagggttgcagagattgcactcaa 611  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  17048870 aaagatcctatgttggtggatgattatggggacaaacttgttgatagcacaaagacaaagataataaggatactattagggttgcagagattgcactcaa 17048969  T
Q  612 taataatggaaaatagcctttgcatcaaacttattatctagtcaaagtaggccctaaatgaagaaaagaattgaataacaatatgacataaattaaacat 711  Q
    ||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17048970 taataatggaaaatagcctttgcatcaa---tcttatctagtcaaagtaggccctaaatgaagaaaagaattgaataacaatatgacataaattaaacat 17049066  T
Q  712 gttgttgagaatgtggagcagtcaaatagagtcactactctcttggtgagaatgagga 769  Q
    ||||||||||||| |||||||||||||||| | ||||  |||||||||||||||||||    
T  17049067 gttgttgagaatgcggagcagtcaaatagattaacta--ctcttggtgagaatgagga 17049122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 17048530 - 17048772
Alignment:
Q  1 ttaaacaattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17048530 ttaaacaattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtgtaa 17048629  T
Q  101 acacattcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgt 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  17048630 acacattcaaacttttttgttaaactctgactgtatgagtcctcttctgtgaggcagggaagtctctgacttgtgttttgaaaaaattgtaatcttgtgt 17048729  T
Q  201 gattatagtgaataacctttgaagtgcaatgagactggactaa 243  Q
    ||||| | ||||||||||||||||| |||||||||||||||||    
T  17048730 gattacaatgaataacctttgaagttcaatgagactggactaa 17048772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 98 - 287
Target Start/End: Complemental strand, 34487875 - 34487684
Alignment:
Q  98 taaacacattcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttg 197  Q
    ||||||||| |||| || ||||| ||||||||||||||| |||| |||| ||||||  |  ||||||||| |||||||| ||||| ||| ||||||||||    
T  34487875 taaacacatacaaatttatttgtaaaactctgattgtataagtcatcttgtgtgagttaaggaagtctctaacttgtgtgttggagaaattgtaatcttg 34487776  T
Q  198 tgtgattatagtg--aataacctttgaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataatctgattctgttgtct 287  Q
    |||||||||||||  |||  | |  ||||||||| |||||||||||||||||||| | || | | ||| |||||||| || || ||||||||    
T  34487775 tgtgattatagtgaaaattccatgggaagtgcaaggagactggactaacctcggaatatgggataaactaggataatttgcttgtgttgtct 34487684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 116 - 272
Target Start/End: Original strand, 26858723 - 26858882
Alignment:
Q  116 tttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgt-tttggaaaaaatgtaatcttgtgtgattatagtgaata 214  Q
    |||| |||||||||||||||  ||||||||| |||||| ||   |||| ||| |||||||| ||||  |||| ||||| || |||||||||||||||| |    
T  26858723 tttgataaactctgattgtagaagtcctcttgtgtgagtcaagaaagtttcttacttgtgtgtttgagaaaattgtaacctagtgtgattatagtgaaaa 26858822  T
Q  215 accttt--gaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataat 272  Q
    | ||||  ||||||||| | ||||| |||||||| | ||||||||| |||||| ||||||    
T  26858823 atcttttggaagtgcaaggggactgaactaaccttgaattgtgaggggaaccaagataat 26858882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 272
Target Start/End: Original strand, 40817632 - 40817817
Alignment:
Q  91 taaagtataaacacattcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgt 190  Q
    ||||||||||||||||| |||||| || |||||||||||| ||||  ||||||||| ||||||| |   |||||||| |||||||| || ||| |  |||    
T  40817632 taaagtataaacacatttaaacttatt-gttaaactctgactgtagaagtcctcttgtgtgaggtaagaaagtctcttacttgtgtatttgaacatttgt 40817730  T
Q  191 aat-cttgtgtgattatagtgaataa---cctttgaagtgc-aatgagactggactaacctcggattgtgaggtgaaccaggataat 272  Q
    |||  |||||||||||||||||| ||   | || ||||||| |||| || | ||||||| | |||||||||||||||| | ||||||    
T  40817731 aatatttgtgtgattatagtgaaaaaattcattggaagtgcaaatgggattagactaacattggattgtgaggtgaacaaagataat 40817817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 272
Target Start/End: Complemental strand, 11833115 - 11832956
Alignment:
Q  115 ttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaata 214  Q
    |||||| ||||| ||||||||  |||| |||| |||||||||  |||||||   |||||||| || ||  || |||||| |||||| ||||||||||| |    
T  11833115 ttttgtaaaactttgattgtaaaagtcttcttatgtgaggcaaggaagtctaaaacttgtgtgtttgagcaattgtaattttgtgtaattatagtgaaaa 11833016  T
Q  215 a-cctttg-aagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataat 272  Q
    | || ||| ||||| || | ||||| |||||||||| ||||||| ||||| |||||||||    
T  11833015 atccattgaaagtgtaaggggactgaactaacctcgaattgtgatgtgaaacaggataat 11832956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 15570991 - 15571027
Alignment:
Q  236 tggactaacctcggattgtgaggtgaaccaggataat 272  Q
    ||||||||||||||||||||||||||| |||||||||    
T  15570991 tggactaacctcggattgtgaggtgaatcaggataat 15571027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17048477 - 17048513
Alignment:
Q  1 ttaaacaattcttacaaacttagtatcttcgaatttc 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  17048477 ttaaaaaattcttacaaacttagtatcttcgaatttc 17048513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 24154680 - 24154748
Alignment:
Q  188 tgtaatcttgtgtgattatagtgaataa-cctttgaagtgcaatgagactggactaacctcggattgtg 255  Q
    ||||||||||||||||||||||||| || || ||| | ||||| | |||| ||||||||||||||||||    
T  24154680 tgtaatcttgtgtgattatagtgaaaaatcccttggattgcaaggggactagactaacctcggattgtg 24154748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 27918816 - 27919161
Alignment:
Q  9 ttcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataaacacattc 108  Q
    ||||||| ||||||||||||| ||||||||| || |||| |||||||||| || ||||||| |||||| ||||| ||| || |||||| ||||||||||     
T  27918816 ttcttacgaacttagtatcttagaatttcttgagtgtcagaagtttcttgaacttaaagcttgtttactactctctgatttataaagtgtaaacacatt- 27918914  T
Q  109 aaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatag 208  Q
    ||| || | ||||||||||||||||||| ||||||||| | ||| |||  |||||||||||||||||| |||||  || ||||||||||||||||||||     
T  27918915 aaatttatctgttaaactctgattgtataagtcctcttgtatga-gcaaggaagtctctgacttgtgtattggagcaattgtaatcttgtgtgattataa 27919013  T
Q  209 tgaataa--cctttgaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataatctgattctgttgtctttcttccctttttctttga 306  Q
    |||| ||  |||| ||| ||||| | ||||  |||||| || ||||||| |||||||||   |||| || || |||||| |||    ||| | | | |||    
T  27919014 tgaaaaattccttagaactgcaaggggactaaactaacatcagattgtggggtgaaccaaactaatttggttgtgttgtgttt----cctctctatctga 27919109  T
Q  307 ttatctcttgttctatttttgttaaaactcttaaaaaga-ttttcagaaaaa 357  Q
    ||||| |||||| | ||||||||||||| |||||||| | ||||||||||||    
T  27919110 ttatcccttgttatttttttgttaaaacacttaaaaatatttttcagaaaaa 27919161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 29966874 - 29966981
Alignment:
Q  101 acacattcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgt 200  Q
    ||||| ||||||| |||||  |||||||||||||||||| |||||| |||||||||  ||||| |||||||||||| |||||  || |||||||||||||    
T  29966874 acacaatcaaactcttttgaaaaactctgattgtatgagccctcttgtgtgaggcaaggaagtatctgacttgtgtgttggagcaattgtaatcttgtgt 29966973  T
Q  201 gattatag 208  Q
     |||||||    
T  29966974 aattatag 29966981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 35512509 - 35512710
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataaacacat 106  Q
    |||||||||||||||||||||||   |||||||| | ||   |||||||| | || | ||| ||||||||||| || | |||| |||||| |||||| ||    
T  35512509 aattcttacaaacttagtatcttaacatttctta-gtgtatgaagtttctcgaactttaagttagtttaccacactctaagttttaaagtgtaaacatat 35512607  T
Q  107 tcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattat 206  Q
     || ||| |||||| ||||| ||||||||  ||||||||| ||| |||||  ||||||||||||||| |  |||||  || ||||||||| |||||||||    
T  35512608 acatactcttttgtaaaactatgattgtagaagtcctcttgtgttaggcaaggaagtctctgacttgggcgttggagcaattgtaatcttatgtgattat 35512707  T
Q  207 agt 209  Q
    |||    
T  35512708 agt 35512710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 29966761 - 29966811
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttctt 57  Q
    ||||||||||||||||||||||| |||||||||||| |||| |||||||||    
T  29966761 aattcttacaaacttagtatcttagaatttcttaagtgtcataagtttctt 29966811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 26275625 - 26275704
Alignment:
Q  195 ttgtgtgattatagtgaataaccttt--gaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataat 272  Q
    |||||||||||||||||| || || |  |||||||||  ||||||||||||||||| |||||| ||||||||| ||||||    
T  26275625 ttgtgtgattatagtgaaaaatctcttagaagtgcaagtagactggactaacctcgaattgtggggtgaaccaagataat 26275704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 22111271 - 22111365
Alignment:
Q  117 ttgttaaactctgatt-gtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtg 210  Q
    |||| ||||||||||| |||  ||||||||| |||||||||   ||||||||||||||||| || ||  || |||| ||||||||||||||||||    
T  22111271 ttgtaaaactctgatttgtagaagtcctcttgtgtgaggcaagcaagtctctgacttgtgtcttagagcaattgtattcttgtgtgattatagtg 22111365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 18114428 - 18114283
Alignment:
Q  69 tagtttaccactctatgagttctaaagta--taaacacattcaaacttttttgttaaa-ctctgattgtatgagtcctcttctgtgaggcagcgaagtct 165  Q
    |||||||||||||| ||||| | ||||||  |||||||| |||||||| |||  |||| ||| |||||||| ||| ||||| | |||||||  ||||| |    
T  18114428 tagtttaccactctttgagtac-aaagtacgtaaacacaatcaaacttatttaataaaactcggattgtataagtactcttgtttgaggcaaggaagttt 18114330  T
Q  166 ctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaa 212  Q
    |  |||||||| |||||  |  |||||| ||||||||||||||||||    
T  18114329 caaacttgtgtgttggagcacttgtaattttgtgtgattatagtgaa 18114283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 271
Target Start/End: Original strand, 16195691 - 16195844
Alignment:
Q  121 taaactctgattgtatgagtcctcttctgtgaggcagcg-aagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataa--cc 217  Q
    |||||||| |||||||  |||||||| |||||||||  | |||| | ||||||||||  || | ||  ||||||||||||||||||||||||| ||  ||    
T  16195691 taaactcttattgtatatgtcctcttgtgtgaggcaaaggaagtatgtgacttgtgtactgtagaacctgtaatcttgtgtgattatagtgaaaaatccc 16195790  T
Q  218 tttgaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataa 271  Q
    || ||||| ||| | | |||||||||| || |||| ||  |||||||| |||||    
T  16195791 ttagaagtacaaagggtctggactaacatcagattatggagtgaaccatgataa 16195844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 17743322 - 17743019
Alignment:
Q  47 aaaagtttcttgtacctaaagct-agtttaccactctatgagttctaaagtataaacacattcaaacttttttgttaaactctgattgtatgagtcctct 145  Q
    |||||||||||| |||| ||| | ||||||||||||| ||||| | ||||| ||  |||||||||| |  |||  |||||||||||||||  ||||||||    
T  17743322 aaaagtttcttgaaccttaagtttagtttaccactctttgagtac-aaagtgtatgcacattcaaattcatttaataaactctgattgtaaaagtcctct 17743224  T
Q  146 tctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataacct-ttg-aagtgcaatgagactggactaa 243  Q
    | |||||| ||   |||||||| |||| ||  ||| |  || ||||||||||||||||||||||||| || || ||| ||||||||||  ||| |||| |    
T  17743223 tgtgtgagccaaataagtctctaacttatgcattgaagcaattgtaatcttgtgtgattatagtgaaaaatctgttgaaagtgcaatggaactagactga 17743124  T
Q  244 cctcggattgtgaggtgaaccaggataatctgattctgttgtctttcttccctttttctttgattatctcttgttctatttttgttaaaactcttaaaaa 343  Q
    ||| ||||| |||| || ||||| ||||| || || |||||||||||||  || | ||  |||||||||| || ||| ||||||||||||||||||||||    
T  17743123 ccttggattatgagatg-accagaataatttgtttatgttgtctttctt--ctctctcactgattatctcctgctctgtttttgttaaaactcttaaaaa 17743027  T
Q  344 gattttca 351  Q
    ||||||||    
T  17743026 gattttca 17743019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 21546169 - 21546373
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataaacacat 106  Q
    ||||||||||||||||||||||| |||||||||  | |||| |||||||||   | | ||  |||||||||||||| |  |||  ||||| |||| ||||    
T  21546169 aattcttacaaacttagtatcttagaatttcttgtgtgtcagaagtttcttaagcttgaaattagtttaccactctttatgtttgaaagtgtaaaaacat 21546268  T
Q  107 tcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattat 206  Q
      ||||| |||| ||||||||| ||||||| |||| |||| ||||||||   |||||| ||||||||||| |||||| || | |||||||||||||||||    
T  21546269 aaaaactattttattaaactcttattgtataagtcgtcttgtgtgaggcgaggaagtcactgacttgtgtgttggaacaattataatcttgtgtgattat 21546368  T
Q  207 agtga 211  Q
    |||||    
T  21546369 agtga 21546373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 16404702 - 16404840
Alignment:
Q  15 caaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataaacacattcaaactt 114  Q
    |||||||||||||||  ||||||||||| |||| |||||||||| || |||||  ||||||||| | | ||||||||||||| ||||||||| |||| |     
T  16404702 caaacttagtatcttaaaatttcttaagtgtcataagtttcttgaacttaaagtcagtttaccaatatctgagttctaaagtgtaaacacatacaaattc 16404801  T
Q  115 ttttgttaaactctgattgtatgagtcctcttctgtgag 153  Q
     ||||| |||||||| |||||| ||||||| | ||||||    
T  16404802 atttgtaaaactctgtttgtataagtcctcgtgtgtgag 16404840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 16301294 - 16301380
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaa 94  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||| ||||| |  ||||| |||||||||||||| |||||||||||    
T  16301294 aattcttacaaacttattatcttagaatttcttaa-cgtcaaaagtatcttgaatttaaagttagtttaccactctctgagttctaaa 16301380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 6115797 - 6115655
Alignment:
Q  121 taaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataa--cct 218  Q
    |||||||||||||||| ||||||||| |||||||||  ||||||||  | |||||| || ||  |  | |||||||||||||||||| |||| ||  | |    
T  6115797 taaactctgattgtataagtcctcttttgtgaggcat-gaagtctcaaaattgtgtgtttgagcagttttaatcttgtgtgattatactgaaaaattctt 6115699  T
Q  219 ttgaagtgcaatgagactggactaacctcggattgtgaggtgaa 262  Q
    | ||| ||||||| ||||||||||||||||||||||| ||||||    
T  6115698 tggaaatgcaatgtgactggactaacctcggattgtggggtgaa 6115655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 23692383 - 23692239
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataaacacat 106  Q
    |||||| |||||||||||||||| | |||||||||| |||| |||||||||| |  ||||| | || || |||||  ||||||||| |||  ||| ||      
T  23692383 aattctcacaaacttagtatcttagtatttcttaagtgtcagaagtttcttgaatttaaag-ttgtgtatcactc--tgagttctatagtgaaaagaccc 23692287  T
Q  107 tcaaacttttttgttaaactctgattgtatgagtcctcttctgtgagg 154  Q
      ||| || ||||||||||||||||||||| |||| |||| |||||||    
T  23692286 ataaatttatttgttaaactctgattgtataagtcatcttttgtgagg 23692239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 17651590 - 17651640
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttctt 57  Q
    ||||||||||||||||||||||| |||||  ||||| |||| |||||||||    
T  17651590 aattcttacaaacttagtatcttagaattgattaagtgtcataagtttctt 17651640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 19052794 - 19052740
Alignment:
Q  188 tgtaatcttgtgtgattatagtgaataacctttgaagtgcaatgagactggacta 242  Q
    |||||||||||||||||||||||||   |||| ||||||||| | ||||||||||    
T  19052794 tgtaatcttgtgtgattatagtgaaatcccttggaagtgcaaggggactggacta 19052740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 44397452 - 44397402
Alignment:
Q  351 agaaaaaccaaacacaatttaaccccattattatgtttttctcaccttcaa 401  Q
    ||||||| | ||||||||| |||||| || |||||||||||||||||||||    
T  44397452 agaaaaagccaacacaattcaacccccttcttatgtttttctcaccttcaa 44397402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 120 - 401
Target Start/End: Original strand, 39228174 - 39228457
Alignment:
Q  120 ttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataac--c 217  Q
    ||||||||||||||| | |||  | || |||||||||  |||||||||||||||||| ||| |  || |||||||  || || |||| ||||| |    |    
T  39228174 ttaaactctgattgtgtaagtttttttgtgtgaggcaaggaagtctctgacttgtgtgttgaaggaattgtaatcacgtatggttatggtgaaaagtttc 39228273  T
Q  218 tttgaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataatctgattctgttgtctttcttccctttttctttgattatctcttgt 317  Q
    || ||||||||| ||||||||| ||| |||  | |||||||||||||| |||||| |  || ||||||||  |||| || | ||||||||||||||||||    
T  39228274 ttagaagtgcaaggagactggattaaactcaaactgtgaggtgaaccatgataat-tccttgtgttgtctcccttctctatctctttgattatctcttgt 39228372  T
Q  318 tctatttttgttaaaactcttaaaaagattttcagaaaaaccaaacacaatttaaccc--cattattatgtttttctcaccttcaa 401  Q
      |   |||||||||||||||||||||||||| ||||||| | | |||||||||||||  |||| || ||||||||||||||||||    
T  39228373 catgcctttgttaaaactcttaaaaagatttttagaaaaa-ctatcacaatttaacccttcattcttgtgtttttctcaccttcaa 39228457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 4514468 - 4514736
Alignment:
Q  8 attcttacaaacttagtatcttcgaatt-tcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttct-aaagtataaacaca 105  Q
    |||||||| ||||||| ||||| ||||| |||||||  |||||||||  |||| |  |||| ||||||||||||||  ||||| | ||||| ||||||      
T  4514468 attcttaccaacttagcatctttgaattatcttaagtttcaaaagttcattgttctaaaagttagtttaccactcttagagttttgaaagtttaaacaat 4514567  T
Q  106 ttcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgatta 205  Q
    | |||| |  ||||  ||||||| ||||||| ||||||||| |||||||||  |||| || |||||||||| ||||| ||| || |||||||||||||||    
T  4514568 tacaaa-tcatttgcaaaactctaattgtataagtcctcttgtgtgaggcaaggaagactttgacttgtgtgttggagaaattgcaatcttgtgtgatta 4514666  T
Q  206 tagtgaataa---cctttgaagtgcaatgagactgga-ctaacctcggattgtgaggtgaaccaggataa 271  Q
    ||||| | ||    ||| ||||| ||| |||||||||   |||||||||||||| ||||||| |||||||    
T  4514667 tagtggaaaaatctcttggaagttcaaggagactggatgcaacctcggattgtggggtgaacaaggataa 4514736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 255
Target Start/End: Original strand, 4123375 - 4123511
Alignment:
Q  121 taaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataaccttt 220  Q
    |||| ||| ||| ||| |||| |||| |||||||||  ||||||||  |||||||| |  || ||| ||||||||||||||||||||||||| || || |    
T  4123375 taaagtctaattttataagtcttcttgtgtgaggcaaggaagtctcaaacttgtgtgtctgagaaattgtaatcttgtgtgattatagtgaaaaatctct 4123474  T
Q  221 --gaagtgcaatgagactggactaacctcggattgtg 255  Q
      |||||| ||   ||||| |||||||||||||||||    
T  4123475 gggaagtgtaagaggactgaactaacctcggattgtg 4123511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 24677051 - 24676974
Alignment:
Q  188 tgtaatcttgtgtgattatagtgaataaccttt--gaagtgcaatgagactggactaacctcggattgtgaggtgaac 263  Q
    |||||||||||||||||||| |||| || || |  |||||| || |||||||||||| |||||| ||||| |||||||    
T  24677051 tgtaatcttgtgtgattatactgaaaaatctcttagaagtgtaaggagactggactagcctcggtttgtggggtgaac 24676974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 3779535 - 3779584
Alignment:
Q  351 agaaaaaccaaacacaatttaaccccattattatgtttttctcaccttca 400  Q
    ||||||| | ||||||||| |||||| || ||||||||||||||||||||    
T  3779535 agaaaaagctaacacaattcaacccccttcttatgtttttctcaccttca 3779584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 14760675 - 14760506
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataaacacat 106  Q
    |||||||||||||||| ||||||  ||||||||||| |||  |||||||||   | ||||| || ||   | |||| ||||||||||||| |||| ||||    
T  14760675 aattcttacaaacttattatcttaaaatttcttaagtgtctgaagtttcttaagcttaaagttaattattcgctctttgagttctaaagtgtaaaaacat 14760576  T
Q  107 tcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgt 176  Q
     |||| | |||| ||||||||| ||||||| ||||||||| |||||||||  ||||||||||||||||||    
T  14760575 gcaaaatcttttattaaactctaattgtataagtcctcttgtgtgaggcacggaagtctctgacttgtgt 14760506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 7 - 293
Target Start/End: Original strand, 25954920 - 25955206
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataaacacat 106  Q
    |||||||||||||||  |||||| |||||||||| | || | ||||| |||| |  ||||| ||||||| |||||| ||||| | ||||| |||||||||    
T  25954920 aattcttacaaactttatatcttagaatttctta-gtgttagaagttacttgaaattaaagttagtttatcactctttgagtacaaaagtttaaacacat 25955018  T
Q  107 tcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattat 206  Q
    |||||   ||||| |||||||||||||||  ||||||||| ||| |||||  ||| |||  ||||||||| |   || || |||||||||||| ||||||    
T  25955019 tcaaa---ttttg-taaactctgattgtagaagtcctcttgtgtaaggcaatgaaatcttagacttgtgtgtctaaataattgtaatcttgtgcgattat 25955114  T
Q  207 agtgaataacctttg-aagtgcaatgagactggactaacctcggattgt----gaggtgaaccaggataatctgattctgttgtctttcttc 293  Q
    |||||| |  ||||| || ||||| |||| || |||||| || ||||||    | |||||||||||||||| || || |||||||| |||||    
T  25955115 agtgaaaattctttgaaaatgcaaggagattgaactaacatcagattgtggccggggtgaaccaggataatttgtttgtgttgtctctcttc 25955206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 16687773 - 16687861
Alignment:
Q  1 ttaaacaattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagtt 89  Q
    ||||| ||||||||||||||||||||||| |||||||| ||  ||||||||||| ||| || |||| ||||||||||||||| ||||||    
T  16687773 ttaaaaaattcttacaaacttagtatcttagaatttctgaattgtcaaaagttttttgaacttaaatctagtttaccactctctgagtt 16687861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 359 - 402
Target Start/End: Original strand, 30608855 - 30608898
Alignment:
Q  359 caaacacaatttaaccccattattatgtttttctcaccttcaaa 402  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  30608855 caaacacaatttaaccccattcttatgtttttctcaccttcaaa 30608898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 15991132 - 15991216
Alignment:
Q  188 tgtaatcttgtgtgattatagtgaataacctttgaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataat 272  Q
    ||||||||||| |||||||| |||| | ||||  |||||||| | ||||||  |||||| |||||||||||||||| || |||||    
T  15991132 tgtaatcttgtatgattataatgaaaatccttaaaagtgcaaggggactgggttaaccttggattgtgaggtgaactagaataat 15991216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 90326 - 90380
Alignment:
Q  351 agaaaaaccaaacacaatttaaccccattattatgtttttctcaccttcaaactt 405  Q
    ||||||| | ||||||||| |||| |||| || ||||||||||||||||||||||    
T  90326 agaaaaagctaacacaattcaacctcattcttgtgtttttctcaccttcaaactt 90380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 17771899 - 17771964
Alignment:
Q  69 tagtttaccactctatgagttctaaagtataaacacattcaaacttttttgttaaactctgattgta 135  Q
    |||||||||||||| |||||   ||||| |||||||| |||||||| |||| |||||||||||||||    
T  17771899 tagtttaccactctttgagtgtcaaagtctaaacacaatcaaacttatttg-taaactctgattgta 17771964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 11849282 - 11849335
Alignment:
Q  323 ttttgttaaaactcttaaaaagattttcagaaaaaccaaacacaatttaacccc 376  Q
    ||||||| ||||||||||||| ||||||| ||||| | ||||||||| ||||||    
T  11849282 ttttgtttaaactcttaaaaatattttcataaaaatccaacacaattcaacccc 11849335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 2120990 - 2121076
Alignment:
Q  188 tgtaatcttgtgtgattatagtgaataac--ctttgaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataat 272  Q
    ||||||||||||||||||||||||| ||   ||||||| |||||  | |||||||||||||| |||||||||||||| || ||||||    
T  2120990 tgtaatcttgtgtgattatagtgaaaaattactttgaaatgcaagaaaactggactaacctcagattgtgaggtgaatcatgataat 2121076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 19121714 - 19121796
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagtt 89  Q
    ||||||||||||||||||||||| |||||||||||| || | ||||||||   || ||||| || ||||||||| ||||||||    
T  19121714 aattcttacaaacttagtatcttagaatttcttaagtgttagaagtttctaaaacttaaagttattttaccactttatgagtt 19121796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 334
Target Start/End: Complemental strand, 13494930 - 13494757
Alignment:
Q  163 tctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataaccttt--gaagtgcaatgagactggactaacctcggattgtgaggtg 260  Q
    |||||||||||||| || ||  || ||||||||||| ||||||||| ||| || | ||  ||||||||| | || | ||||||| || |||| |  ||||    
T  13494930 tctctgacttgtgtgttcgagcaattgtaatcttgtttgattatagcgaaaaatcatttggaagtgcaaggggaattgactaacttcagattctagggtg 13494831  T
Q  261 aaccaggataatctgattctgttgtctttcttccctttttctttgattatctcttgttctatttttgttaaaac 334  Q
    ||||| |||||| || || |||||||| || || |||  ||| ||||||||||||| ||| ||||||| |||||    
T  13494830 aaccatgataatttgtttgtgttgtctctcatctcttactctctgattatctcttgctctgtttttgtcaaaac 13494757  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 13698605 - 13698556
Alignment:
Q  351 agaaaaaccaaacacaatttaaccccattattatgtttttctcaccttca 400  Q
    ||||||| | ||||||||| ||||||||| ||||||||||||||||||||    
T  13698605 agaaaaagctaacacaattcaaccccattcttatgtttttctcaccttca 13698556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 7833636 - 7833677
Alignment:
Q  361 aacacaatttaaccccattattatgtttttctcaccttcaaa 402  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  7833636 aacacaatttaacccccttcttgtgtttttctcaccttcaaa 7833677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 7833719 - 7833760
Alignment:
Q  361 aacacaatttaaccccattattatgtttttctcaccttcaaa 402  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  7833719 aacacaatttaacccccttcttgtgtttttctcaccttcaaa 7833760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 13495056 - 13495003
Alignment:
Q  4 aacaattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttctt 57  Q
    ||||||||||||||| ||  |||||| |||||||||||| |||| |||||||||    
T  13495056 aacaattcttacaaattttatatcttggaatttcttaagtgtcagaagtttctt 13495003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 3318633 - 3318525
Alignment:
Q  188 tgtaatcttgtgtgattatagtgaataa--cctttgaagtgcaatgagactggactaacctcggattgtgaggtgaaccaggataatctgattctgttgt 285  Q
    ||||||||||||||||||| ||| | ||  |||| ||||||||| ||||||||||||| ||| ||||||| | |||||||| ||||| || || ||||||    
T  3318633 tgtaatcttgtgtgattattgtggaaaatcccttggaagtgcaaagagactggactaatctcagattgtgggatgaaccagcataat-tgtttgtgttgt 3318535  T
Q  286 ctttcttccc 295  Q
    || |||||||    
T  3318534 ctctcttccc 3318525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 12842772 - 12842639
Alignment:
Q  116 tttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataa 215  Q
    |||| |||||||| ||||||| | ||||||| |||||||||  ||||||||  |||||||| || ||  || |||||||||||||||||||||| || ||    
T  12842772 tttgataaactctaattgtataattcctcttgtgtgaggcaaagaagtctcaaacttgtgtgtttgatcaattgtaatcttgtgtgattatagtaaaaaa 12842673  T
Q  216 ccttt--gaagtgcaatgagactggactaacctc 247  Q
      |||  |||||| || | |||||||||||||||    
T  12842672 tattttggaagtgtaaggggactggactaacctc 12842639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 272
Target Start/End: Complemental strand, 20704319 - 20704116
Alignment:
Q  71 gtttaccactctatgagttctaaagtataaacacattcaaacttttttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgac 170  Q
    ||||||||||||||||  | |||| | |||||||| ||  | || ||||||||||||| | ||| ||||||||||| | |||| ||  ||||||||  ||    
T  20704319 gtttaccactctatgatat-taaactgtaaacacagtctcatttatttgttaaactctaactgtgtgagtcctcttgtctgagacaaggaagtctcaaac 20704221  T
Q  171 ttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataacctttga---agtgcaatgagactggactaacctcggattgtgaggtgaaccagg 267  Q
    |||||| || ||  |  ||||||||||||||||| ||||| | || || | |   ||||||| | |||||||||||||||| |||||| ||||||| |||    
T  20704220 ttgtgtgtttgagcagttgtaatcttgtgtgattgtagtggaaaatctattagaaagtgcaaggggactggactaacctcgaattgtggggtgaacaagg 20704121  T
Q  268 ataat 272  Q
    |||||    
T  20704120 ataat 20704116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 252
Target Start/End: Original strand, 33929183 - 33929320
Alignment:
Q  116 tttgttaaactctgattgtatgagtcctcttctgtgaggcagcgaagtctctgacttgtgttttggaaaaaatgtaatcttgtgtgattatagtgaataa 215  Q
    ||||||||||| |||| |||| ||||||||| ||||||| |   |||||||  ||||| || || || ||| | ||||||||||||||||||||||| ||    
T  33929183 tttgttaaactttgatggtataagtcctcttgtgtgaggtaataaagtctca-acttgcgtgtttgataaattataatcttgtgtgattatagtgaaaaa 33929281  T
Q  216 cc--tttgaagtgcaatgagactggactaacctcggatt 252  Q
     |  || |||||||||   ||||||||||||||||||||    
T  33929282 tcatttggaagtgcaagaggactggactaacctcggatt 33929320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 35104383 - 35104500
Alignment:
Q  7 aattcttacaaacttagtatcttcgaatttcttaagcgtcaaaagtttcttgtacctaaagctagtttaccactctatgagttctaaagtataaacacat 106  Q
    ||||||||||||||||||||||| |||||| || || || | ||||| ||||  | ||||| ||| ||||||||   ||| ||||||||| |||| ||||    
T  35104383 aattcttacaaacttagtatcttagaattt-ttcagtgttagaagttacttgagcttaaagttaggttaccactaattgaattctaaagtgtaaaaacat 35104481  T
Q  107 tcaaacttttttgttaaac 125  Q
     |||||| |||||| ||||    
T  35104482 gcaaactcttttgtaaaac 35104500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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