View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_low_20 (Length: 500)

Name: NF16592_low_20
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_low_20
NF16592_low_20
[»] chr6 (2 HSPs)
chr6 (19-500)||(29008706-29009187)
chr6 (422-500)||(21408425-21408498)


Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 29009187 - 29008706
Alignment:
Q  19 tcaaccgcgcaaagatcatatatgttcgcttcaacttcttgattaaattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttc 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29009187 tcaaccgcgcaaagatcatataggttcgcttcaacttcttgattacattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttc 29009088  T
Q  119 tatataatttgcatttgcacgctactattttcactgaaactaattcttcaatttcatttgacactgttacggtgttatattcattcaattagatgaagaa 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||    
T  29009087 tatataatttgcatttgcacgctacaattttcactgaaactaattcttcaattgcatttgatactgttacggtgttgtattcattcgattagatgaagaa 29008988  T
Q  219 tttgaatcgaagctatagttaactctgtgnnnnnnnnnnnnnnnnnnnnnnnntaggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcg 318  Q
    |||||||||||||||||||||||||||||                        |||||||||||||||||||||||||||||||||||||||||||||||    
T  29008987 tttgaatcgaagctatagttaactctgtgtttttgattttttggtttgatttgtaggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcg 29008888  T
Q  319 tcttggcttcaattctcttccgttgcgtttgtggtggtaaccacaccgttggtggtgcttccgcctgggatcttgaatccaatatgcaggtttgggcttc 418  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29008887 tcttggcttcgattctcttccgttgcgtttgtggtggtaaccacaccgttggtggtgcttccgcctgggatcttgaatccaatatgcaggattgggcttc 29008788  T
Q  419 cactgagagcttcaacgtcggcgacgatctcggtacgtttcttcatgtcttgaattgatttcaacagaatcattttcgtgaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29008787 cactgagagcttcaacgtcggcgacgatctcggtacgtttcttcatgtcttgaattgatttcaacagaatcattttcgtgaa 29008706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 500
Target Start/End: Original strand, 21408425 - 21408498
Alignment:
Q  422 tgagagcttcaacgtcggcgacgatctcggtacgtttcttcatgtcttgaattgatttcaacagaatcattttcgtgaa 500  Q
    |||||||||||| ||||| ||| || | ||||||||||||||||||     |||||||||| ||||||||||| |||||    
T  21408425 tgagagcttcaatgtcggtgacaattttggtacgtttcttcatgtc-----ttgatttcaatagaatcatttttgtgaa 21408498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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