View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_21 (Length: 489)
Name: NF16592_low_21
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 49272422 - 49271953
Alignment:
| Q |
1 |
gaagtgtgttgtttaatttgttgttgaagagattcaatgtacaaggttgttgcctctgcaaatgtatataggtatcaactctagaagttaatttcttgaa |
100 |
Q |
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| T |
49272422 |
gaagtttgttgtttaatttgttgttgaagagattgaatgtacaaggatgttgcctctgcaaatgtatataggtatcaaatcttgaagttaatttcttgaa |
49272323 |
T |
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| Q |
101 |
atgtcaa-gtgtttgtagtaacccgtta-gaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaag |
198 |
Q |
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| T |
49272322 |
atgtcaaagtgtttgtagtaacccgttaagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaag |
49272223 |
T |
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| Q |
199 |
ctcaccaatccttttgtgatatcagtgggacatataaataaacacaaacacactaacaaagaggaacggaacagaggagaagagaatttctttaactcaa |
298 |
Q |
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| T |
49272222 |
ctcaccaatccttttgtgatatcggtgggacatataaataaacacaaacacactaacaaagaggaacggaacagaggagaagagaatttctttaactcaa |
49272123 |
T |
|
| Q |
299 |
tatttcaatttccctattcttaaagggatttggcctcttaagcgcgattctttaaaagaagcaatgtgtcacgccaggtcaagtttgataaatcacgcca |
398 |
Q |
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| T |
49272122 |
tatttcaatttccctattcttaaagggatttggcctcttaa--gcgattctttaaaagaagcaatatgtcacgcctggtcaagtttgataaatcacgcca |
49272025 |
T |
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| Q |
399 |
aaaatgttgttgtagatatgtccaagtatttcagattttctaannnnnnnacgaaattggcagtgtttcgga |
470 |
Q |
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| T |
49272024 |
aaaatgttgttgtagatatgtccaagtatttcagattttccaatttttttacgaaattggcagtgtttcgga |
49271953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 13225263 - 13225168
Alignment:
| Q |
112 |
ttgtagtaacccgttagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaagctcaccaat |
207 |
Q |
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| T |
13225263 |
ttgtagtaacccgttagaaccgagttttggtggtaatgcaccggtgaatgagttgttgaaaatatggaaagtgttgagttttggaaggtcaccaat |
13225168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 13315104 - 13315200
Alignment:
| Q |
111 |
tttgtagtaacccgttagaacccaattttggtggtagtgtaccaccgaatgaattgatgaaaacaatgaaattggtaagttttggaagctcaccaat |
207 |
Q |
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| T |
13315104 |
tttgtagcaacccgttggaaccgagtttcgggggtagtctaccaatgagtgaattgttgaaaacttggaaagtgttgagttttggaagctcaccaat |
13315200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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