View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_24 (Length: 476)
Name: NF16592_low_24
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 43257205 - 43257654
Alignment:
| Q |
19 |
agagttgactttgtaacctcaagagacataaaattaaacgaatcggttgtaatatggtcatctgagacactattattaataaaaagcaaacata--atta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43257205 |
agagttgactttgtaacctcaagagacatagaaa-----gaatcggttgtaatatggtcatctgagacactattattaataaaaagcaaacatataatta |
43257299 |
T |
|
| Q |
117 |
agaaaaatttgagtgagagataaaccttgacaggagcagctgccttgacaacaaaggatccttttctagaagacccaactgaagatgggagtgatcttgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43257300 |
agaaaaatttgagtgagagataaaccttgacaggagcagctgccttgacaacaaaggatccttttctagaagacccaattgaagatgggagtgatcttgc |
43257399 |
T |
|
| Q |
217 |
tccaaaactatgtcttacagcttcagctgcaaaagtatgagatgatgacgacaatagaatttgtgtagccatgtttttctcttctttgttgcctctagga |
316 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43257400 |
tccaaaactctgtcttacagcttcagctgcaaaagtaagagatgacgacgacaatagaacttgtgtagccatgtttttcccttctttgttgcctctagga |
43257499 |
T |
|
| Q |
317 |
acaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagataaatggaggaagatatgaagaactctaagtcactactttcaagttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43257500 |
acaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagataaatggaggaagatatgaagaactctaagtcactactttcaagttt |
43257599 |
T |
|
| Q |
417 |
gtgcatgcaagcaacgtggaagttcttgtggaagactgcatgtgatgatgatgtc |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43257600 |
gtgcatgcaagcaacgtggaagttcttgtggaagactgcatgtgatgatgatgtc |
43257654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 64 - 371
Target Start/End: Original strand, 43260834 - 43261150
Alignment:
| Q |
64 |
gttgtaatatggtcatctgagacactattattaat-aaaaagcaaacataa--ttaagaaaaatttgagtgagagataaaccttgacaggagcag----- |
155 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||| ||||| ||||||| || |
|
|
| T |
43260834 |
gttgtaatatgatcatcagagacactattattaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaa |
43260933 |
T |
|
| Q |
156 |
-ctgccttgacaacaaaggatccttttctagaagacccaactgaagatgggagtgatcttgctccaaaactatgtcttacagcttcagctgcaaaagtat |
254 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
43260934 |
gctgccttgacaacaaaggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagtaa |
43261033 |
T |
|
| Q |
255 |
gagatgatgacgacaatagaatttgtgtagccatgtttttctcttctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggtta |
354 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43261034 |
gagatgatgacgacactagagcttgtgtagccatgtttttccctcctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggtta |
43261133 |
T |
|
| Q |
355 |
agaatgaatgatagata |
371 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43261134 |
agaatgaatgatagata |
43261150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 399
Target Start/End: Original strand, 43261169 - 43261197
Alignment:
| Q |
371 |
aaatggaggaagatatgaagaactctaag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43261169 |
aaatggaggaagatatgaagaactctaag |
43261197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University