View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_26 (Length: 470)
Name: NF16592_low_26
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_26 |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Complemental strand, 7179164 - 7178708
Alignment:
| Q |
19 |
ttaacagatgaattacttaatcaactctcttcaactaataatttctcaaactatgaatgaatgataattaaaaagataaatgaaatcacattcatcaggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
7179164 |
ttaacagatgaattacttaatcaactctcttcaagtaataatttctcaaactatgaatgaatgataattaaaaagctaaatgaaatcaccttcatcaggt |
7179065 |
T |
|
| Q |
119 |
tgataggtactaaaaccaatctatatctttcaataaattctaaatgaataaatgtaccaacattttattacaccaattcaacacttcataatgtttc--- |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7179064 |
tgataggtactaaaaccaatctatagctttcaataaattctaaatgaataaatgtaccaacattttattacaccaattcaacttttcataatgtttctca |
7178965 |
T |
|
| Q |
216 |
--agcaatctattaaatctatcacatatctatatccatttcagcaataaggcgcaaatctttgttctgttcattgtccttggttgagatagaattatcat |
313 |
Q |
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| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7178964 |
ttatcaatctattaaatctatcacatatctatgtccatttcagcaataaggcgcaaatctttgttctcttcattgtccttggttgagatagaattatcat |
7178865 |
T |
|
| Q |
314 |
tacaattgtactcgttgcaaatgtcttcccatcgtagcttatcgataacactacaatgcatttgccattcaatcagcccatatgagatcgagtcttcttg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7178864 |
tacaattgtactcgttgcaaatgtcttcccatcgtagcttatcgataacactacaatgcatttgccattcaatcagcccatatgagattgagtcttcttg |
7178765 |
T |
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| Q |
414 |
tagaataggtgaaggttcgatggaattattacccatattctcatcaccatttttctt |
470 |
Q |
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| T |
7178764 |
tagaataggtgaaggttggattgaattattacccatattctcttcaccatttttctt |
7178708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 63 - 470
Target Start/End: Original strand, 14815746 - 14816166
Alignment:
| Q |
63 |
ctcaaactatgaatgaatgataattaaaaagataaatgaaatcacattcatcaggttgataggtactaaaaccaatctatatctttcaataaattctaaa |
162 |
Q |
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|||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
14815746 |
ctcaaactatgaatgaatgacagttaaaaagctaaatgaaatcacattcatcaagttgataagtactaaaaccaatctatagctttcaataaattctaaa |
14815845 |
T |
|
| Q |
163 |
tgaataaatgtaccaacattttattacaccaattcaacacttcataatgtttc------------------agcaatctattaaatctatcacatatcta |
244 |
Q |
| |
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|||| || |||||||| |||| ||||| ||||||||||||||||| ||||| | | |||||||| ||||||||||| | | |
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| T |
14815846 |
tgaaaaa--gtaccaacgtttt-ttacatcaattcaacacttcataccgtttctatctcccctatcgcattatccatctattacatctatcacat--cca |
14815940 |
T |
|
| Q |
245 |
tatccatttcagcaataaggcgcaaatctttgttctgttcattgtccttggttgagatagaattatcattacaattgtactcgttgcaaatgtcttccca |
344 |
Q |
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| ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||| |||| |||||||||||| |
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| T |
14815941 |
tctccatttcatcaatgaggtgcaaatctttgttctgttcattgtctttggttgatattgaattatcattacaagcgtactcattgcgaatgtcttccca |
14816040 |
T |
|
| Q |
345 |
tcgtagcttatcgataacactacaatgcatttgccattcaatcagcccatatgagatcgagtcttcttgtagaataggtgaaggttcgatggaattatta |
444 |
Q |
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|| || ||||||||||||||||||||||| || |||||| || ||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
14816041 |
tcatatcttatcgataacactacaatgcactttccattctattagcccatataagatcgagtcttcttgtagaataggtgaaggttggattgaattatta |
14816140 |
T |
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| Q |
445 |
cccatattctcatcaccatttttctt |
470 |
Q |
| |
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||| ||||||||||||| ||||||| |
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| T |
14816141 |
cccgcattctcatcaccaattttctt |
14816166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 219 - 470
Target Start/End: Complemental strand, 7173568 - 7173315
Alignment:
| Q |
219 |
aatctattaaatctatcacatat--ctatatccatttcagcaataaggcgcaaatctttgttctgttcattgtccttggttgagatagaattatcattac |
316 |
Q |
| |
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|||||||||||| |||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7173568 |
aatctattaaatttatcacatatatctatctccatttcagcaatgaggtgcaaatctttgttctgttcattgtccttggttgagatagaattatcattac |
7173469 |
T |
|
| Q |
317 |
aattgtactcgttgcaaatgtcttcccatcgtagcttatcgataacactacaatgcatttgccattcaatcagcccatatgagatcgagtcttcttgtag |
416 |
Q |
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|| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
7173468 |
aagtgtactcattgcaaatgtcttcccatcgtattttatcgataacactacaatgcatttgacattcaatcagcccatataagatcgagtcttcttgtag |
7173369 |
T |
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| Q |
417 |
aataggtgaaggttcgatggaattattacccatattctcatcaccatttttctt |
470 |
Q |
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|||||||||||||| ||| ||||||||||||| |||||| || ||| ||||||| |
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| T |
7173368 |
aataggtgaaggttggattgaattattacccacattctcgtcgccaattttctt |
7173315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 7173914 - 7173798
Alignment:
| Q |
99 |
tgaaatcacattcatcaggttgataggtactaaaaccaatctatatctttcaataaattctaaatgaataaatgtaccaacattttattacaccaattca |
198 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
7173914 |
tgaaatcacattcatcaagttgataggtactaaaaccaatctatagctttcaataaattctaaatgaataattgtaccaacattttattacaccaattaa |
7173815 |
T |
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| Q |
199 |
acacttcataatgtttc |
215 |
Q |
| |
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||||||||||||||||| |
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| T |
7173814 |
acacttcataatgtttc |
7173798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 7170704 - 7170591
Alignment:
| Q |
95 |
taaatgaaatcacattcatcaggttgataggtactaaaaccaatctatatctttcaataaattctaaatgaataaatgtaccaacattttattacaccaa |
194 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
7170704 |
taaatgaaatcacattcaa---gttgataagtactaaaaccaatctatagctttcaataaattctaaatgaataaatgtaccaaactt---ttacaccaa |
7170611 |
T |
|
| Q |
195 |
ttcaacacttcataatgttt |
214 |
Q |
| |
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||||||| |||||| ||||| |
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| T |
7170610 |
ttcaacatttcatactgttt |
7170591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 63 - 470
Target Start/End: Complemental strand, 23965 - 23545
Alignment:
| Q |
63 |
ctcaaactatgaatgaatgataattaaaaagataaatgaaatcacattcatcaggttgataggtactaaaaccaatctatatctttcaataaattctaaa |
162 |
Q |
| |
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|||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
23965 |
ctcaaactatgaatgaatgacagttaaaaagctaaatgaaatcacattcatcaagttgataagtactaaaaccaatctatagctttcaataaattctaaa |
23866 |
T |
|
| Q |
163 |
tgaataaatgtaccaacattttattacaccaattcaacacttcataatgtttc------------------agcaatctattaaatctatcacatatcta |
244 |
Q |
| |
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|||| || |||||||| |||| ||||| ||||||||||||||||| ||||| | | |||||||| ||||||||||| | | |
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| T |
23865 |
tgaaaaa--gtaccaacgtttt-ttacatcaattcaacacttcataccgtttctatctcccctatcgcattatccatctattacatctatcacat--cca |
23771 |
T |
|
| Q |
245 |
tatccatttcagcaataaggcgcaaatctttgttctgttcattgtccttggttgagatagaattatcattacaattgtactcgttgcaaatgtcttccca |
344 |
Q |
| |
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| ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||| |||| |||||||||||| |
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| T |
23770 |
tctccatttcatcaatgaggtgcaaatctttgttctgttcattgtctttggttgatattgaattatcattacaagcgtactcattgcgaatgtcttccca |
23671 |
T |
|
| Q |
345 |
tcgtagcttatcgataacactacaatgcatttgccattcaatcagcccatatgagatcgagtcttcttgtagaataggtgaaggttcgatggaattatta |
444 |
Q |
| |
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|| || ||||||||||||||||||||||| || |||||| || ||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
23670 |
tcatatcttatcgataacactacaatgcactttccattctattagcccatataagatcgagtcttcttgtagaataggtgaaggttggattgaattatta |
23571 |
T |
|
| Q |
445 |
cccatattctcatcaccatttttctt |
470 |
Q |
| |
|
||| ||||||||||||| ||||||| |
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|
| T |
23570 |
cccgcattctcatcaccaattttctt |
23545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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