View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_28 (Length: 459)
Name: NF16592_low_28
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Complemental strand, 33399045 - 33398601
Alignment:
| Q |
10 |
aagaaaattgtgtactggtgttactatgatttatggtaaataaagttatcttaaaactaacattgaacaaagtagaactttcttattagtattgcaaagt |
109 |
Q |
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| T |
33399045 |
aagaaaattgtgtactggtgttactatgatttatggtaaataaagttatcttaaaactaacattgaacaaagtagaactttcttattagtattgcaaagt |
33398946 |
T |
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| Q |
110 |
agacaggtttttgaatggcttgtcgagccggacagcgacgcatagtccgcaaaaaataaaacaccgcatagctcaagcctggccttgtcaagccggacag |
209 |
Q |
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| T |
33398945 |
agacaggtttttgaatggcttgtcgagccggacagcgacgcatagtccgcaaaaaataaaacaccgcatagctcaagcctggccttgtcaagccggacag |
33398846 |
T |
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| Q |
210 |
cagtgcgtgtgatagtcatgtgacctgtgtcatctcccgtatacaaaattcggtaactcttggataacaccccaatgaggcataccttcactata----- |
304 |
Q |
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| T |
33398845 |
cagtgcgtgtgatagtcatgtgacctttgtcatctcccgtatacaaaattcggtaactcttggataacaccccaatgaggcataccttcactatataaac |
33398746 |
T |
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| Q |
305 |
-------ttgtatgaagtctctcttatccgggacttctaggaagttttcaattacacattttgttccaacaattcatatgtgagagaaagcaaagaatga |
397 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33398745 |
ccatgtgttgtgtgaagtctctcttatccgggacttctaggaacttttcaattacacattttgttccaacaattcatatgtgagagaaagcaaagaatga |
33398646 |
T |
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| Q |
398 |
aaaattaaatactaataatgcataactaaaagtttctcttctttt |
442 |
Q |
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| T |
33398645 |
aaaattaaatactaataatgcataactaaaagtttctcttctttt |
33398601 |
T |
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