View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_3 (Length: 739)
Name: NF16592_low_3
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 648; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 1 - 722
Target Start/End: Original strand, 44566053 - 44566755
Alignment:
| Q |
1 |
tttcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566053 |
tttcaccatgatatgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccat |
44566152 |
T |
|
| Q |
101 |
tgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44566153 |
tgctgcagttggacttt-------------------tcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgt |
44566233 |
T |
|
| Q |
201 |
cttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatattttattatatattgcttttggcagtatcttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
44566234 |
cttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatattttattatatattgctttttgcagtatcttc |
44566333 |
T |
|
| Q |
301 |
gtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgctcttcagaagagaaaataaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44566334 |
gtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgctcttcagaagagaaaataaatt |
44566433 |
T |
|
| Q |
401 |
tctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaatttacaggtgcctttgggtttggcagtcacatggacatttgctttttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44566434 |
tctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaatttacaggtgcctttgggtttggcagtcacatggacatttgctttttt |
44566533 |
T |
|
| Q |
501 |
gctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44566534 |
gctgactgaaaacggccggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggt |
44566633 |
T |
|
| Q |
601 |
actcctgtgttcaattggaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttagattcttatcttttttatttctttcta |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44566634 |
actcctgtgttcaattggaaaatggctattgtgatgtgtgtcgtttccttaatctcttctgtggattcggttagattcttatcttttttatttctttcta |
44566733 |
T |
|
| Q |
701 |
ttttgtttcctggacttaattt |
722 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44566734 |
ttttgtttcctggacttaattt |
44566755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 510
Target Start/End: Complemental strand, 36033142 - 36032639
Alignment:
| Q |
3 |
tcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattg |
102 |
Q |
| |
|
||||||| ||||||||||| | | || || ||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
36033142 |
tcaccataatttgatcactgttgggtttgaaatcaaagtaatatgttttgcatctcaattttcaggtttatcaatcctgtggttgtatccccaaccattg |
36033043 |
T |
|
| Q |
103 |
ctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtct |
202 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||| |||||||| ||| ||||||| |||||| |||| ||||||||| |||||||||||| || |
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|
| T |
36033042 |
ctgcagttggactttcattttatggttatggttttcctcttgttggcacatgtattgagattggtgcaatacaaatattagtggttattgttttttccct |
36032943 |
T |
|
| Q |
203 |
tgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatattttattatatattgcttttggcagtatcttcgt |
302 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||||||||| ||| | | | ||||| | | ||| | ||||||||| ||||||||||||| |
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|
| T |
36032942 |
tgtaag-----tgaattcagactcccactttgtctatggtattgatcatcac---gcgctgacttcatccattttttattgctttctgcagtatcttcgt |
36032851 |
T |
|
| Q |
303 |
aagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgctcttcagaagagaaaataaatttc |
402 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| ||||||||||||||| ||||||| | ||| |||| ||||| |||| || || ||||||||||||| |
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|
| T |
36032850 |
aagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgcaatgccataatatccttccgagttactctatagcagtgaaaataaatttc |
36032751 |
T |
|
| Q |
403 |
tgtggtgtaaaaaatgatttttgttaagtgatat----tattttctttacctaatttacaggtgcctttgggtttggcagtcacatggacatttgctttt |
498 |
Q |
| |
|
|| |||||| ||||||||| ||||||||||| | |||||| |||||||||||| ||||| ||||||||||||||| | |||||| || ||||||| |
|
|
| T |
36032750 |
tgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttacctaatttgcaggttcctttgggtttggcaattacatgggcagttgctttc |
36032651 |
T |
|
| Q |
499 |
ttgctgactgaa |
510 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36032650 |
ttgctgactgaa |
36032639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 518 - 716
Target Start/End: Complemental strand, 36032553 - 36032355
Alignment:
| Q |
518 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
617 |
Q |
| |
|
|||||||| |||||| |||| ||||||| || |||| | |||| |||||||||||| ||||||||||||| ||||||||||||||||||| ||| | || |
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|
| T |
36032553 |
ggatgaaatattgtcgagttgatacttcgcatgcaatcaaatcatccccatggtttaaatttccctatccattgcaatggggtactcctgtcttccactg |
36032454 |
T |
|
| Q |
618 |
gaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttagattcttatcttttttatttctttctattttgtttcctggact |
716 |
Q |
| |
|
|||||||||| |||||||||| || |||||||||||||| || |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |
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|
| T |
36032453 |
gaaaatggctcttgtgatgtgtgtggtttccttaatctcatccgtggattcggttagattcttgtcttttttgtttctttttattttgtttcctggact |
36032355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 518 - 688
Target Start/End: Original strand, 20122450 - 20122620
Alignment:
| Q |
518 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
617 |
Q |
| |
|
||||||| ||||||| ||| |||||||| || || ||| ||| | ||||||||||||||||||||||| | ||||||||| |||||| || | || |
|
|
| T |
20122450 |
ggatgaagcattgtcgggttgatacttctcatgcattgaaatcctctccatggtttagatttccctatccgttacaatggggtgttcctgtctttcactg |
20122549 |
T |
|
| Q |
618 |
gaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttagattcttatcttttt |
688 |
Q |
| |
|
|||||||||| |||| ||||| || |||||||||||||| || |||||||||||||| ||||| ||||||| |
|
|
| T |
20122550 |
gaaaatggctcttgtaatgtgtgtggtttccttaatctcatccgtggattcggttagtttcttgtcttttt |
20122620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 20121896 - 20122045
Alignment:
| Q |
62 |
tttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgag |
161 |
Q |
| |
|
||||||| | |||||||| || ||||||||| |||| ||||||||||||||||||||||| | || || || || || |||| || || ||||||||| |
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|
| T |
20121896 |
tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgag |
20121995 |
T |
|
| Q |
162 |
atcggtgcagtacagatattagtgtttattgttttttgtcttgtaagttt |
211 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| | ||||| |||||| |
|
|
| T |
20121996 |
attggtgcagtacagatattagtggttattgttttctctcttggaagttt |
20122045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
| Q |
291 |
cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt |
350 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||| || || ||||||||| |
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|
| T |
20122158 |
cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt |
20122217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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