View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_31 (Length: 440)
Name: NF16592_low_31
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 113 - 423
Target Start/End: Original strand, 3803773 - 3804074
Alignment:
| Q |
113 |
ctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatattgtgctttaaagtattgataagaagaaattaaagaaattgtttaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3803773 |
ctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatattgtgctttaaagtattgataagaa------------attgtttaa |
3803860 |
T |
|
| Q |
213 |
agttacaaaacaatcctttt--ccgtaatataaacgaagaccgagtctgaaaagcaaaaacaatttaaaacataaagttgcaatacaaattcacatatca |
310 |
Q |
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|||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3803861 |
agttacaaaacaatccttttatccttaatgtaaatcaagaccgagtctgaaaagcaaaaacaatttaaaacataaagttgcaatacaaattcacatatca |
3803960 |
T |
|
| Q |
311 |
gcttatgtagttatttaattctcatattcttccatgttcatgtaccaattcttgtagtattaggaaatagggtaaagtaaaggctaatgttaaaagagcc |
410 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
3803961 |
gcttctgtagttatttaatactcatattcttccatgttcatgtaccaattcttgtagtattaggatatagggtaaagtaaaggataatgttaaaggagcc |
3804060 |
T |
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| Q |
411 |
tt-actgagtttat |
423 |
Q |
| |
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|| ||||||||||| |
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| T |
3804061 |
ttcactgagtttat |
3804074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 3821950 - 3822109
Alignment:
| Q |
9 |
gatatgaacaaaatattatagtttaaagtattgataagaaacagactgctctaattaatgctatcaaattattttcatatttcaatctgatctgaaaaac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3821950 |
gatatgaacaaaatattatagtttaaagtattgataagaaacagactgctctaattaatgctatcaaattattttcatatttcaatctgatctgaaaaag |
3822049 |
T |
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| Q |
109 |
aatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatatt |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3822050 |
aatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatatt |
3822109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 48 - 309
Target Start/End: Original strand, 3812350 - 3812594
Alignment:
| Q |
48 |
aacagactg-ctctaattaatgctatcaaattattttcatatttcaatctgatctgaaaaacaatcctaagaaaataattttgaacattttctaaattca |
146 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3812350 |
aacagactggctctaattaatgctatcaaattattttcatatttcaatctgatctgaaaaacaatcctaagaaaataattttgaacattttctaaattc- |
3812448 |
T |
|
| Q |
147 |
aaatattgttgtttaaaatattgtgctttaaagtattgataagaagaaattaaagaaattgtttaaagttacaaaacaatccttttccgtaatataaacg |
246 |
Q |
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||||||||| ||||||| ||||||| |||||| |||||||||||||| || ||||||| ||||| ||||| ||| ||||| |
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| T |
3812449 |
--------------aaaatattgcactttaaattattgat---aagaaaataaagaaattgttttaaattacaaagcaatcattttcatcaatgtaaaca |
3812531 |
T |
|
| Q |
247 |
aagaccgagtctgaaaagcaaaaacaatttaaaacataaagttgcaatacaaattcacatatc |
309 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3812532 |
aagaccgagattgaaaagcaaaaacaatttaaaacataaaattgcaatacaaattcacatatc |
3812594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 322 - 423
Target Start/End: Original strand, 4223171 - 4223273
Alignment:
| Q |
322 |
tatttaattctcatattcttccatgttcatgtaccaattcttgtagtattaggaaatagggtaaagtaaaggctaatgttaaaagagcctt-actgagtt |
420 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||| |||||||| |
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| T |
4223171 |
tatttaatactaatattcttccatgttcatgtaccaattcttgtagtattaggatatagggtaaagtaaaggctaatgttatatgagtcttcactgagtt |
4223270 |
T |
|
| Q |
421 |
tat |
423 |
Q |
| |
|
||| |
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|
| T |
4223271 |
tat |
4223273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 3822106 - 3822186
Alignment:
| Q |
322 |
tatttaattctcatattcttccatgttcatgtaccaattcttgtagtattaggaaatagggtaaagtaaaggctaatgtta |
402 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3822106 |
tatttaatactaatattcttccatgttcatgtaccaattcttgtagtattaggatatagggtaaagtaaaggctaatgtta |
3822186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 4223109 - 4223174
Alignment:
| Q |
103 |
aaaaacaatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatatt |
168 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4223109 |
aaaaacaatcctaagaaaataattttgaacattttctaaattcaaaatattgttgtttaaaatatt |
4223174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 3914571 - 3914489
Alignment:
| Q |
258 |
tgaaaagcaaaaacaatttaaaacataaagttgcaatacaaattcacatatcagcttatgtagttatttaattctcatattct |
340 |
Q |
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| T |
3914571 |
tgaaaagaaaaaataatttaaaacataaatttgcaatacaagttcacatatcagcttatgtagttatttaatactcatattct |
3914489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 3951940 - 3951873
Alignment:
| Q |
308 |
tcagcttatgtagttatttaattctcatattcttccatgttcatgtaccaattcttgtagtattagga |
375 |
Q |
| |
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||||||| |||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||| |
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| T |
3951940 |
tcagcttttgtagttatttaataatcacattctgacatgttcatgtaccaaatcttgtagtattagga |
3951873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 3952368 - 3952306
Alignment:
| Q |
18 |
aaaatattatagtttaaagtattgataagaaacagactgctctaattaatgctatcaaattat |
80 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
3952368 |
aaaatattatactataaagtatttataagaaacagactattctaattaatggtatcaaattat |
3952306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 4012552 - 4012621
Alignment:
| Q |
32 |
taaagtattgataagaaacagactgctctaattaatgctatcaaattattttcatatttcaatctgatct |
101 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||| || ||||||||||||| | ||||||||||||| |
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| T |
4012552 |
taaagtattgataagaaacagactattctaaccaatggtaacaaattattttcacacttcaatctgatct |
4012621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 4012663 - 4012717
Alignment:
| Q |
215 |
ttacaaaacaatccttttccgtaatataaacgaagaccgagtctgaaaagcaaaa |
269 |
Q |
| |
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|||||||| ||||||||||| ||||||||| ||||| |||| |||||||||||| |
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| T |
4012663 |
ttacaaaataatccttttcctcaatataaaccaagactgagtttgaaaagcaaaa |
4012717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 311
Target Start/End: Original strand, 4012791 - 4012821
Alignment:
| Q |
281 |
cataaagttgcaatacaaattcacatatcag |
311 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
4012791 |
cataaagttgcaatacaaattcacatatcag |
4012821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 4003893 - 4003926
Alignment:
| Q |
22 |
tattatagtttaaagtattgataagaaacagact |
55 |
Q |
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||||||| |||||||||||||||||||||||||| |
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|
| T |
4003893 |
tattatactttaaagtattgataagaaacagact |
4003926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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