View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_34 (Length: 419)
Name: NF16592_low_34
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 15483481 - 15483869
Alignment:
| Q |
16 |
tgaatcctttgagttttatggtcaaaattggataaaaccatttatggcaaacaaacgtaaaaagactttaattttggagggtaattgcttatttactcct |
115 |
Q |
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| T |
15483481 |
tgaatcctttgagttttatggtcaaaattggataaaaccatttatggcaaacaaacgtaaaaagactttaattttggagggtaattgcttatttactcct |
15483580 |
T |
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| Q |
116 |
taatttaaaagatggaatcgctgcaaagagaatgtttccataacgaatcgctcacttataccaatttgttggaacaagcactcgcttccatgaattacac |
215 |
Q |
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| T |
15483581 |
taatttaaaagatggaatcgctgcaaagagaatgtttccatatcgaatcgctcacttataccaatttgttggaacaagcactcgcttctatgaattacac |
15483680 |
T |
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| Q |
216 |
actgattataccatcactcacaacaagagtagaaaataaaattgttttagaacttagaaaatgaacataacgatctcacaaattttattgaataatacat |
315 |
Q |
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| T |
15483681 |
actgattataccatcactcacaacaagagtagaaaataaaattgttttagaacttagaaaatgaacataacgatctcacaaattttattgaataatacat |
15483780 |
T |
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| Q |
316 |
attgaaatacacacgactattttgtaaacacccataacaaaagctgactcaataacacaatattacaacattaacaaacagtgattctt |
404 |
Q |
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| T |
15483781 |
attgaaatacacacgactattttgtaaacacccataacaaaagctgactcaataacacaatattacaacattaacaaacagtgattctt |
15483869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 15615837 - 15615912
Alignment:
| Q |
165 |
gctcacttataccaattt--gttggaacaagcactcgcttccatgaattacacactgattataccatcactcacaa |
238 |
Q |
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| T |
15615837 |
gctcactaataccaattttcgctggaacaagctctcacttgcatgaatcacacactggttctacaatcactcacaa |
15615912 |
T |
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