View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_35 (Length: 414)
Name: NF16592_low_35
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_35 |
 | |
|
| [»] scaffold0504 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 27814615 - 27814785
Alignment:
| Q |
16 |
caacaagatctactggctggctctgtgttatgaataaattttcttgtaatcaaaatccatattgattcacacagtttattttcaattcagaataatgcat |
115 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27814615 |
caacaagatctactggctggttctgttatatgaataaatttttttgtaatcaaaatccatattgattcacacagtttattttcaattcag---aatgcat |
27814711 |
T |
|
| Q |
116 |
atgttgcaggtagtgtgttaactatctagcgtgttaaatacaaagtaaaacggcaatagtgaaaattcgcgaga |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
27814712 |
atgttgcaggtagtgtgttaactatctagcgtgttaaataaaaagtaaaacggcaatcgtgaaaattcgtgaga |
27814785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 20196042 - 20195871
Alignment:
| Q |
30 |
ggctggctctgtgttatgaataaattttcttgtaatcaaaatccatattgattcacacagtttattttcaattcagaat--aatgcatatgttgcaggta |
127 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||| | | | || || ||||| |||| |
|
|
| T |
20196042 |
ggctggctctgttatatgaataaatgttcttgtaatcaaaaaccacattgattcacacagtttattt-caactaaatttgtaaagcca--gttgctggta |
20195946 |
T |
|
| Q |
128 |
gtgtgttaactatctagcgtgttaaatacaaagtaaaacggcaatagtgaaaattcgcgagatatagcaccgctc |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
20195945 |
gtgtgttacttatctagcgtgttaaatacatagtaaaacggcaatcgtgaaaattcgctagatataacaccgctc |
20195871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 23889369 - 23889298
Alignment:
| Q |
24 |
tctactggctggctctgtgttatgaataaattttcttgtaatcaaaatccatattgattcacacagtttattt |
96 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
23889369 |
tctactggctggctctgttatatgaataa-ttttcttgtgatcaaaacccatattgattcacacagtttattt |
23889298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 23901582 - 23901511
Alignment:
| Q |
24 |
tctactggctggctctgtgttatgaataaattttcttgtaatcaaaatccatattgattcacacagtttattt |
96 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
23901582 |
tctactggctggctctgttatatgaataa-ttttcttgtgatcaaaacccatattgattcacacagtttattt |
23901511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 36379305 - 36379376
Alignment:
| Q |
24 |
tctactggctggctctgtgttatgaataaattttcttgtaatcaaaatccatattgattcacacagtttattt |
96 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
36379305 |
tctactgactggctctgtcatatgaataa-ttttcttgtgatcaaaacccatattgattcacacattttattt |
36379376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 39205088 - 39205159
Alignment:
| Q |
24 |
tctactggctggctctgtgttatgaataaattttcttgtaatcaaaatccatattgattcacacagtttattt |
96 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
39205088 |
tctactggctgactctgttatatgaataa-ttttcttgtaatcaaaacccatattgattcacacaggttattt |
39205159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 4997 - 5068
Alignment:
| Q |
24 |
tctactggctggctctgtgttatgaataaattttcttgtaatcaaaatccatattgattcacacagtttattt |
96 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
4997 |
tctattggctggctctgttatatgaataa-ttttcttgtgatcaaaacccatattgattcacacagttaattt |
5068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 3743869 - 3743802
Alignment:
| Q |
117 |
tgttgcaggtagtgtgttaactatctagcgtgttaaatacaaagtaaaacggcaatagtgaaaattcg |
184 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
3743869 |
tgttgctggtagtctgttacttatctagcgtgttaaatacatagtaaaatggcaatcgtgaaaattcg |
3743802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University