View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_36 (Length: 410)
Name: NF16592_low_36
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 219 - 394
Target Start/End: Complemental strand, 10010269 - 10010094
Alignment:
| Q |
219 |
gaaattgtcttctcgctctgctacaggtagcttggtgttcttggagtaattttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10010269 |
gaaattgtcttctcgctctgctacaggtagcttggtgttcttggagtaattttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagc |
10010170 |
T |
|
| Q |
319 |
aagggagttggtcaggatgttactttactatttaaaggactttttaaagttttgtgccgcttttttacgttgtcat |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10010169 |
aagggagttggtcaggatgttactttactatttaaaggactttttaaagttttgtgccgcttttttacgttgtcat |
10010094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 10010487 - 10010293
Alignment:
| Q |
5 |
agatatataggtcgattggattcggcttctgttctcctttttctacaataaatgtgtaacatgcaattaacaaatttagttacataggatgcacggttat |
104 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
10010487 |
agatatataggttgattggaatcggcttctgttctcctttttctacaataaatgtgtaacatgcaattaacaattttagttacataggatgcacggtaat |
10010388 |
T |
|
| Q |
105 |
tgcttttatttttgtccttatataggttgaatagaatccggtaaaatatattgctatcgaattgatttgagcttaaattggtatagtttatgtcc |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10010387 |
tgcttttatttttatccttatataggttgaatagaatccggtaaaatatattgctgtcaaattgatttgagcttaaattagtatagtttatgtcc |
10010293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 394
Target Start/End: Original strand, 47248710 - 47248848
Alignment:
| Q |
256 |
ttcttggagtaattttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaag |
355 |
Q |
| |
|
|||||| |||| ||||||| ||||| ||||| |||||| || || ||||||||| ||||||||| |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
47248710 |
ttcttgaagtagttttggattgaaggcaaaagatcacaacttttacctgtaaaattatgcagcaaaggagttggtcagaatgttgctttactatttaaag |
47248809 |
T |
|
| Q |
356 |
gactttttaaagttttgtgccgcttttttacgttgtcat |
394 |
Q |
| |
|
|| ||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
47248810 |
gaatttttcaagtttgctgccgcttttttaaattgtcat |
47248848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 268 - 394
Target Start/End: Complemental strand, 42310637 - 42310511
Alignment:
| Q |
268 |
ttttggaatgaagacaaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaaggactttttaaag |
367 |
Q |
| |
|
||||||| ||||| |||||||||||| || || ||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
42310637 |
ttttggattgaaggcaaaatatcacaacttctacctgtaaaattatgcagcaaaggaggtggtcagaatgttactttactatttaaaggaatttttcaag |
42310538 |
T |
|
| Q |
368 |
ttttgtgccgcttttttacgttgtcat |
394 |
Q |
| |
|
||| ||||||||||||||| ||||||| |
|
|
| T |
42310537 |
tttggtgccgcttttttacattgtcat |
42310511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University