View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_4 (Length: 679)
Name: NF16592_low_4
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 7e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 428 - 624
Target Start/End: Complemental strand, 1433015 - 1432817
Alignment:
| Q |
428 |
gtaacatgagaattttaataatgttcctttaaatgtatatttttt--ggaaggtgaattattgttttgctgttaaccgtaatatattcaacccaagatag |
525 |
Q |
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| T |
1433015 |
gtaacatgagaattttaataatgttcctttaaatgtatattttttttggaaggtgaattattgttttgatgttaaccgtaatatattcaacccaagatag |
1432916 |
T |
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| Q |
526 |
tgggaaaatgtaaatattaccaccactgtttgttttttagacaaggagaaactagaaagcatatattacctctaaacagttgatgaattttgacaggga |
624 |
Q |
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| T |
1432915 |
tgggaaaatgtaaatattaccaccactgttagttttttagacaaggagaaactagaaagcatatattacctctaaacagttgatgaattttgacaggga |
1432817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 1433489 - 1433360
Alignment:
| Q |
13 |
atgaatcaaacagctgtaaacataactgcgtcgatgccgttccaacaccaaatccaattccaatgaatagtaggattggacccacacatcgagttaaaaa |
112 |
Q |
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| T |
1433489 |
atgaatcaaacggctgtaaacgtaactgcgtcgacgccgttccaacaccaaatccaattccaatgaatagtaggattggtcccacacatcgagttaaaaa |
1433390 |
T |
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| Q |
113 |
aatgaattgattgatcgaaaacaacaaaag |
142 |
Q |
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| T |
1433389 |
aatgaattgattgatcgaaaacaacaaaag |
1433360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 1433296 - 1433211
Alignment:
| Q |
206 |
cctaaaagctattttgaagcaattgacgttaaagtggataaagaaaattgaagtgtgagtcttctctgtttgaaagagtagtcaat |
291 |
Q |
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| T |
1433296 |
cctaaaagctattttgaagcaattgacgttaaagtggatagagaaaattgaagtgtgagtcttctctgtttgaaagagtcgtcaat |
1433211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 1433072 - 1433033
Alignment:
| Q |
368 |
gaggaaagaaagactatttgtatatatgttgatgatatacgc |
409 |
Q |
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| T |
1433072 |
gaggaaagaaagactatttgt--atatgttgatgatatacgc |
1433033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 28083804 - 28083761
Alignment:
| Q |
240 |
tggataaagaaaattgaagtgtgagtcttctctgtttgaaagag |
283 |
Q |
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| T |
28083804 |
tggataatgaaaattgaagtgtgagtcttctctgtgtgagagag |
28083761 |
T |
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