View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_40 (Length: 392)
Name: NF16592_low_40
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_40 |
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| [»] scaffold0405 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 223 - 380
Target Start/End: Original strand, 9695388 - 9695545
Alignment:
| Q |
223 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaaagctctgtctgatgctgtgagaattttgcttctgtttcacc |
322 |
Q |
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| T |
9695388 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaaagctctgtctgatgctgtgagaattttgcttctgtttcacc |
9695487 |
T |
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| Q |
323 |
gaaggaaattaatctaattctcttagttttgattttaaagtcgtttttgtgatttgtg |
380 |
Q |
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| T |
9695488 |
gaaggaaattaatctaattctcttagttttgattttaaagtcgtttttgtgatttgtg |
9695545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 9695165 - 9695332
Alignment:
| Q |
1 |
tttctgcgtttcggtgaagttcaaaacgttacgaacgtgttccgttgaagttcgatttgattctgatgattttcttt-ttgttgtgatttttaggtctga |
99 |
Q |
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| T |
9695165 |
tttctgcgtttcggtgaagttcaaaacgttacgaacgtgttccgttgaagttcgatttgattctgatgattttttttgttgttgtgatttttaggtctga |
9695264 |
T |
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| Q |
100 |
gttcagagagaggttcaagaaggagaatccaagcaacaagtccgttgctgtggtgagatttctgacgc |
167 |
Q |
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| T |
9695265 |
gttcagagagaggttcaagaaggagaatccaagcaacaagtccgttgctgtggtgagatttctgacgc |
9695332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 30440189 - 30440131
Alignment:
| Q |
223 |
ctaacgtgatttacggtgaatttgaatcaggttgggaaagccggtggaaaggaatggaa |
281 |
Q |
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| T |
30440189 |
ctaacgtgatttacggtgaatttgaattaggttgggaaagttggtggaaaggaatggaa |
30440131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 30440355 - 30440258
Alignment:
| Q |
57 |
ttgattctgatgattttctttttgttgtgatttttaggtctgagttcagagagaggttcaag-aaggagaatccaagcaacaagtccgttgctgtggtga |
155 |
Q |
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| T |
30440355 |
ttgattctgatgatttttgttttgt---gatttttaggtctgaattcagagagaggtttaagaaaagagaatccaagcaacaaatccattgtcgtggtga |
30440259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 19208053 - 19208014
Alignment:
| Q |
84 |
tgatttttaggtctgagttcagagagaggttcaagaagga |
123 |
Q |
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| T |
19208053 |
tgatttttaggtctgagttcagagagactttcaagaagga |
19208014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 15302 - 15174
Alignment:
| Q |
38 |
tgttccgttgaagttcgatttgattctgatgattttctttttgttgtgatttttaggtctgagttcagagagaggttcaagaaggagaatccaagcaaca |
137 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||| |||||| ||||||||| |
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| T |
15302 |
tgttctgttgaagttcgatttgattctgatgatttttgttttgt---gatttttaggtctgaatttagagagaggttcaagaaagagaattcaagcaaca |
15206 |
T |
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| Q |
138 |
agtccgttgctgtggtgagatttctgacgcga |
169 |
Q |
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| T |
15205 |
aatccgttgttgtggtgagttttgtgaagcga |
15174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 15111 - 15071
Alignment:
| Q |
237 |
ggtgaatttgaatcaggttgggaaagccggtggaaaggaat |
277 |
Q |
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| T |
15111 |
ggtgaatttgaattaggttgggaaagctggtggaaaagaat |
15071 |
T |
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