View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_41 (Length: 389)
Name: NF16592_low_41
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 155 - 373
Target Start/End: Complemental strand, 44470697 - 44470476
Alignment:
| Q |
155 |
atatatatataatacgtacataaagccttttatttaagattcaataacgtatacattcatgtgtacgctatattgttgttcaaatgatttttaataattt |
254 |
Q |
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| T |
44470697 |
atatatatataatacgtacataaagccttttatttaagattcaataatgtatacattcatgtgtacgctatattgttgttcaaatgatttttaataattt |
44470598 |
T |
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| Q |
255 |
tgaattaaagggtattcccttctttggattaatatttcaaaataaaaataaagatgagaatataaaatttatttacttgttgggtatgaaggagagtgac |
354 |
Q |
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| T |
44470597 |
tgaattaaagggtattcccttctttggattaatatttcaaaataaaaataaagatgagaatataaaatttatttacttgttgggtatgaaggagagtgac |
44470498 |
T |
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| Q |
355 |
c---aatgatggtgttgcatgt |
373 |
Q |
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| T |
44470497 |
caataatgatggtgttgcatgt |
44470476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 44470872 - 44470719
Alignment:
| Q |
12 |
aagaacctgagtgccatcagcatctccaattaaaatatcgattgcatctgttgtaagtcttggagaactgcagcttgttgttatgatgatcttgtaaata |
111 |
Q |
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| T |
44470872 |
aagaacctgagtgccatcagcatctccaattaaaatatcgattgcatctgttgtaagtcttggagaactgcagcttgttgttatgatgatcttgtaaata |
44470773 |
T |
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| Q |
112 |
cagctaccacttgatagtgcagtctcattaatctgaaacatgcatatatatata |
165 |
Q |
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| T |
44470772 |
cagctaccacttgatagtgcagtctcattaatctgaaacatgcatatatatata |
44470719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 44474643 - 44474568
Alignment:
| Q |
261 |
aaagggtattcccttctttggattaatatttcaaaataaaaataaagatgagaatataaaatttatttacttgttg |
336 |
Q |
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| T |
44474643 |
aaagggtattcccttgtttgaattaatatttcaaagtaaaaataaagatgagaatataaaatgtattaacttgttg |
44474568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 44474895 - 44474747
Alignment:
| Q |
15 |
aacctgagtgccatcagcatctccaattaaaatatcgattgcatctgttgtaagtcttggagaactgcagcttgttgttatgatgatcttgtaaatacag |
114 |
Q |
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||||||| |||||| ||| |||||||||| ||| ||||||| |||||||||| || ||||||||||||||||| ||||| |||||||||| | ||| |
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| T |
44474895 |
aacctgattgccattagcgtctccaattataatgtcgattgtatctgttgtatgttccggagaactgcagcttgtctttatgtcgatcttgtaattgcag |
44474796 |
T |
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| Q |
115 |
ctaccacttgat------agtgcagtctcattaatctgaaacatgcata |
157 |
Q |
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| T |
44474795 |
ctaccactacctctaacaagttcagtctcattaatctgaaacatgcata |
44474747 |
T |
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