View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_44 (Length: 377)
Name: NF16592_low_44
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 5010852 - 5011192
Alignment:
| Q |
20 |
tcaatgatcatgcgtatagcatattataaatgataagatgtagacacaaaatttgtttgaccaataaggttatatctcacgtggccaactatttgccatt |
119 |
Q |
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| T |
5010852 |
tcaatgatcatgcgtatagcatattataaacgataagatgtagacacaaaatttatttgaccaataaggttatatctcacgtggccaactatttgccatt |
5010951 |
T |
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| Q |
120 |
gctttatacggcgtggtcggttccatttctgcaccttcnnnnnnncctacatagctgcggactcaaccttataacttgttcaccaaaattattctataaa |
219 |
Q |
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| T |
5010952 |
gctttatacggcgtggtcggttccatttctgcatcttctttttt-cctacatagctgcagactcaaccttataacttgttcaccaaaattattctataaa |
5011050 |
T |
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| Q |
220 |
atcaagccaaaccaaagtttcaatttatatcatatatagtacttctagttctactactagcttgccatcaaaagcaaggtatgcatacacttccttcttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5011051 |
atcaagccaaaccaaagtttcaatttatatcatatatagtacttctagttctactactagcttgccatcaaaagcaaggtatgcatacacttccttcttc |
5011150 |
T |
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| Q |
320 |
tttcatatcatatattagcatgatatatatcaaagagtgttt |
361 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5011151 |
tttcatatcatatattagcatgatacatatcaaagagtgttt |
5011192 |
T |
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