View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_low_46 (Length: 377)

Name: NF16592_low_46
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_low_46
NF16592_low_46
[»] chr7 (22 HSPs)
chr7 (1-357)||(31330842-31331196)
chr7 (8-54)||(30391908-30391954)
chr7 (97-159)||(38398423-38398484)
chr7 (97-159)||(38400965-38401026)
chr7 (9-54)||(28066965-28067010)
chr7 (101-177)||(9477690-9477765)
chr7 (101-159)||(3551528-3551585)
chr7 (8-54)||(12499311-12499357)
chr7 (8-54)||(16562263-16562309)
chr7 (8-54)||(16603353-16603399)
chr7 (8-54)||(26299744-26299790)
chr7 (8-54)||(36073796-36073842)
chr7 (100-154)||(42284572-42284625)
chr7 (8-54)||(48558388-48558434)
chr7 (97-153)||(2960003-2960059)
chr7 (10-54)||(9354883-9354927)
chr7 (348-376)||(11290104-11290132)
chr7 (97-141)||(17172209-17172253)
chr7 (22-54)||(21153539-21153571)
chr7 (349-377)||(28898532-28898560)
chr7 (101-153)||(43702409-43702460)
chr7 (97-141)||(44300793-44300837)
[»] chr1 (14 HSPs)
chr1 (97-153)||(3821266-3821322)
chr1 (97-166)||(31873293-31873362)
chr1 (346-377)||(41411929-41411960)
chr1 (8-54)||(28192199-28192245)
chr1 (8-54)||(32888517-32888563)
chr1 (348-377)||(46939199-46939228)
chr1 (103-159)||(424626-424681)
chr1 (6-54)||(2465335-2465383)
chr1 (97-141)||(4893283-4893327)
chr1 (6-54)||(16176753-16176801)
chr1 (97-141)||(20415041-20415085)
chr1 (97-141)||(29185160-29185204)
chr1 (101-153)||(29512208-29512259)
chr1 (10-54)||(47665698-47665742)
[»] chr6 (4 HSPs)
chr6 (8-59)||(31538544-31538595)
chr6 (99-177)||(33960141-33960216)
chr6 (3-54)||(6799135-6799186)
chr6 (97-141)||(24447110-24447154)
[»] scaffold0242 (2 HSPs)
scaffold0242 (8-54)||(12783-12829)
scaffold0242 (8-54)||(21618-21664)
[»] chr5 (11 HSPs)
chr5 (8-54)||(639059-639105)
chr5 (8-54)||(16187133-16187179)
chr5 (99-182)||(3049760-3049843)
chr5 (8-54)||(24488849-24488895)
chr5 (344-374)||(33894204-33894234)
chr5 (101-153)||(6224840-6224891)
chr5 (97-141)||(19254477-19254521)
chr5 (101-153)||(31149689-31149740)
chr5 (97-141)||(34718773-34718817)
chr5 (97-141)||(41692457-41692501)
chr5 (101-153)||(41983310-41983361)
[»] chr4 (14 HSPs)
chr4 (8-54)||(41781015-41781061)
chr4 (6-54)||(8643985-8644033)
chr4 (6-53)||(8805623-8805670)
chr4 (8-54)||(52014175-52014221)
chr4 (112-177)||(7250520-7250584)
chr4 (349-377)||(1620434-1620462)
chr4 (349-377)||(8080554-8080582)
chr4 (6-54)||(8614854-8614902)
chr4 (22-54)||(21297133-21297165)
chr4 (97-153)||(21297269-21297325)
chr4 (101-153)||(34459619-34459670)
chr4 (97-141)||(52802248-52802292)
chr4 (97-141)||(53140694-53140738)
chr4 (349-377)||(54442280-54442308)
[»] chr3 (14 HSPs)
chr3 (8-54)||(27346924-27346970)
chr3 (98-160)||(50622253-50622316)
chr3 (8-54)||(10084970-10085016)
chr3 (8-54)||(10191890-10191936)
chr3 (8-54)||(14418514-14418560)
chr3 (101-159)||(19873144-19873201)
chr3 (8-54)||(32995585-32995631)
chr3 (99-153)||(33558787-33558840)
chr3 (8-54)||(36678817-36678863)
chr3 (97-159)||(41410252-41410314)
chr3 (23-60)||(2150474-2150511)
chr3 (101-153)||(11671794-11671845)
chr3 (97-141)||(42096737-42096781)
chr3 (97-141)||(45079200-45079244)
[»] chr2 (7 HSPs)
chr2 (8-54)||(8754234-8754280)
chr2 (10-56)||(35005120-35005166)
chr2 (8-54)||(2657151-2657197)
chr2 (8-54)||(8027214-8027260)
chr2 (8-54)||(12758060-12758106)
chr2 (8-54)||(42969377-42969423)
chr2 (10-54)||(12345252-12345296)
[»] chr8 (7 HSPs)
chr8 (9-54)||(29527952-29527997)
chr8 (348-377)||(44625494-44625523)
chr8 (349-377)||(7016982-7017010)
chr8 (349-377)||(14122138-14122166)
chr8 (97-141)||(20216281-20216325)
chr8 (97-141)||(20235879-20235923)
chr8 (102-154)||(30801308-30801359)
[»] scaffold0938 (1 HSPs)
scaffold0938 (6-54)||(834-882)
[»] scaffold0602 (1 HSPs)
scaffold0602 (6-54)||(5307-5355)
[»] scaffold0062 (2 HSPs)
scaffold0062 (6-54)||(23570-23618)
scaffold0062 (6-54)||(33738-33786)
[»] scaffold0249 (1 HSPs)
scaffold0249 (11-54)||(20394-20437)
[»] scaffold0024 (1 HSPs)
scaffold0024 (8-54)||(109710-109756)
[»] scaffold0312 (1 HSPs)
scaffold0312 (103-159)||(5868-5923)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 31330842 - 31331196
Alignment:
Q  1 atcttcacaacccgcatttacgtatttaaataatatgataaataatttatttatctatttaagcctaaaagctgtttaatttatttgaannnnnnnggat 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  31330842 atcttcgcaacccgcatttacgtatttaaataatatcataaatactttatttatctatttaagcctaaaagctgtttaatttatttgaatttttttggat 31330941  T
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggtatgtgtacttaggtgcccagaaggtaaatagaagggtattaa 200  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| | |||||||| ||  |||||||||||    
T  31330942 catagttttatttcagttgtgatgttttccgttgtcttttcgtagttaaagtgtgggtatgtgcacttaggtgtctagaaggtatatgaaagggtattaa 31331041  T
Q  201 agatgttgcccacaaaggtacgagtttgggtacagatatannnnnnnacaaatgtgggtatggggaggagtgctatagtccctacccatgggttacccat 300  Q
    ||||||||||||||||| ||||||||||||||||||||||       ||||||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  31331042 agatgttgcccacaaagatacgagtttgggtacagatata--tttttacaaatgcgggtatggggaagagtgctataatccctacccatgggttacccat 31331139  T
Q  301 tatcatccctaaatttctacttaaacctatgatttgtaatgatgattttaaaattaa 357  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31331140 tatcatccttaaatttctacttaaacctatgatttgtaataatgattttaaaattaa 31331196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 30391954 - 30391908
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||    
T  30391954 caacccgcatatatgtatttatataatatgataaataatttatttat 30391908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 38398423 - 38398484
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggta 159  Q
    |||||||||||||| |||| |||| |||||||  ||||||||||| |||||||||||||||||    
T  38398423 ggatcatagttttatttcaattgtaatgttttt-attgtcttttcatagttaaagtgtaggta 38398484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 38400965 - 38401026
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggta 159  Q
    |||||||||||||| |||| |||| |||||||  ||||||||||| |||||||||||||||||    
T  38400965 ggatcatagttttatttcaattgtaatgttttt-attgtcttttcatagttaaagtgtaggta 38401026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 28066965 - 28067010
Alignment:
Q  9 aacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    ||||||||| || ||||||| |||||||||||||||||||||||||    
T  28066965 aacccgcatatatgtatttatataatatgataaataatttatttat 28067010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 9477765 - 9477690
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggtatgtgtacttaggtgccca 177  Q
    |||||||||| |||| ||||||||||||  ||||||||||| |||||||||||  |||||| | |||||||| ||||    
T  9477765 catagttttatttcaattgtgatgttttt-attgtcttttcatagttaaagtgcgggtatgggcacttaggtaccca 9477690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 3551528 - 3551585
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggta 159  Q
    ||||||| || |||| ||||||||||||| ||||||||||| |||||||||||| ||||    
T  3551528 catagttctatttcaattgtgatgttttc-attgtcttttcatagttaaagtgtgggta 3551585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 12499311 - 12499357
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  12499311 caacccgcatatatgtatttatataatattataaataatttatttat 12499357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 16562309 - 16562263
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  16562309 caacccgcatatatgtatttatataatattataaataatttatttat 16562263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 16603353 - 16603399
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  16603353 caacccgcatatatgtatttatataatattataaataatttatttat 16603399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 26299790 - 26299744
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  26299790 caacccgcatatatgtatttatataatattataaataatttatttat 26299744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 36073796 - 36073842
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| ||| |||||||||||||| ||||||| |||||||||    
T  36073796 caacccgcatatacatatttaaataatataataaatattttatttat 36073842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 42284625 - 42284572
Alignment:
Q  100 tcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgt 154  Q
    ||||||||||| |||| ||||||||||||  ||||||||||| ||||||||||||    
T  42284625 tcatagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtgt 42284572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 48558388 - 48558434
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  48558388 caacccgcatatatgtatttatataatataataaataatttatttat 48558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 2960059 - 2960003
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||| ||||| |||| ||||||||||||  |||||| |||| |||||||||||    
T  2960059 ggatcataattttatttcaattgtgatgttttttattgtcatttcatagttaaagtg 2960003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 9354883 - 9354927
Alignment:
Q  10 acccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||| || ||||||| ||||||| |||||||||||||||||    
T  9354883 acccgcatatatgtatttatataatattataaataatttatttat 9354927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 376
Target Start/End: Original strand, 11290104 - 11290132
Alignment:
Q  348 ttaaaattaagggttaaatatgtttttgg 376  Q
    |||||||||||||||||||||||||||||    
T  11290104 ttaaaattaagggttaaatatgtttttgg 11290132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 17172209 - 17172253
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  17172209 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 17172253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 21153571 - 21153539
Alignment:
Q  22 gtatttaaataatatgataaataatttatttat 54  Q
    ||||||| |||||||||||||||||||||||||    
T  21153571 gtatttatataatatgataaataatttatttat 21153539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 28898560 - 28898532
Alignment:
Q  349 taaaattaagggttaaatatgtttttggt 377  Q
    |||||||||||||||||||||||||||||    
T  28898560 taaaattaagggttaaatatgtttttggt 28898532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 43702409 - 43702460
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  43702409 catagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtg 43702460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 44300837 - 44300793
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  44300837 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 44300793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 3821266 - 3821322
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  3821266 ggatcatagttttatttcaattgtgatgttttttattgtcttttcatagttaaagtg 3821322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 31873293 - 31873362
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggtatgtgtac 166  Q
    |||||||||||||| |||| ||||||||||||  ||||||||||  || ||||||||| |||||| ||||    
T  31873293 ggatcatagttttatttcaattgtgatgttttttattgtctttttataattaaagtgtgggtatgggtac 31873362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 346 - 377
Target Start/End: Complemental strand, 41411960 - 41411929
Alignment:
Q  346 ttttaaaattaagggttaaatatgtttttggt 377  Q
    ||||||||||||||||||||||||||||||||    
T  41411960 ttttaaaattaagggttaaatatgtttttggt 41411929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 28192199 - 28192245
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  28192199 caacccgcatatatgtatttatataatattataaataatttatttat 28192245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 32888563 - 32888517
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||||||| |||| | |||||||||| ||||||||||||||    
T  32888563 caacccgcatttacatattcatataatatgatgaataatttatttat 32888517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 377
Target Start/End: Original strand, 46939199 - 46939228
Alignment:
Q  348 ttaaaattaagggttaaatatgtttttggt 377  Q
    ||||||||||||||||||||||||||||||    
T  46939199 ttaaaattaagggttaaatatgtttttggt 46939228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 424681 - 424626
Alignment:
Q  103 tagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggta 159  Q
    |||||||| |||| ||||||||||||  ||||||||||| |||||||||||| ||||    
T  424681 tagttttatttcatttgtgatgttttt-attgtcttttcatagttaaagtgtgggta 424626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 2465335 - 2465383
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||||| ||| || ||| ||||||||||||||||||| |||||    
T  2465335 cacaacccgcatatacatagttatataatatgataaataatttgtttat 2465383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 4893283 - 4893327
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  4893283 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 4893327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 16176753 - 16176801
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||||| ||| |||||| ||||||| ||||||| |||||||||    
T  16176753 cacaacccgcatatacatatttatataatataataaatattttatttat 16176801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 20415085 - 20415041
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  20415085 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 20415041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 29185204 - 29185160
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  29185204 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 29185160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 29512208 - 29512259
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  29512208 catagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtg 29512259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 47665742 - 47665698
Alignment:
Q  10 acccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||| || ||||||| ||||||| |||||||||||||||||    
T  47665742 acccgcatatatgtatttatataatattataaataatttatttat 47665698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 31538544 - 31538595
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttatctatt 59  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||||| ||||    
T  31538544 caacccgcatatacatatttatataatatgataaataatttatttatttatt 31538595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 33960141 - 33960216
Alignment:
Q  99 atcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggtatgtgtacttaggtgccca 177  Q
    |||||||||||| |||| |||||||||||| |||||||||||| |||   | |||| |||||| | |||||||||||||    
T  33960141 atcatagttttatttcaattgtgatgtttttcattgtcttttcatag---aggtgtgggtatgggcacttaggtgccca 33960216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 6799135 - 6799186
Alignment:
Q  3 cttcacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||| |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  6799135 cttcgcaacccgcatatatgtatttatataatattataaataatttatttat 6799186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 24447110 - 24447154
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  24447110 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 24447154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 12783 - 12829
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||    
T  12783 caacccgcatatatgtatttatataatatgataaataatttatttat 12829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 21618 - 21664
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||    
T  21618 caacccgcatatatgtatttatataatatgataaataatttatttat 21664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 639059 - 639105
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||    
T  639059 caacccgcatatatgtatttatataatatgataaataatttatttat 639105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 16187179 - 16187133
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||    
T  16187179 caacccgcatatatgtatttatataatatgataaataatttatttat 16187133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 3049760 - 3049843
Alignment:
Q  99 atcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggtatgtgtacttaggtgcccagaagg 182  Q
    |||||||||||| |||| ||||| ||||||  ||| ||||||| | | ||||||| ||||||| ||||||| ||||||| ||||    
T  3049760 atcatagttttatttcaattgtggtgttttttattatcttttcatggctaaagtgcaggtatgggtacttaagtgcccataagg 3049843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 24488849 - 24488895
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| |||  ||||| |||||||||||||||||||||||||    
T  24488849 caacccgcatatacaaatttatataatatgataaataatttatttat 24488895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 33894204 - 33894234
Alignment:
Q  344 gattttaaaattaagggttaaatatgttttt 374  Q
    |||||||||||||||||||||||||||||||    
T  33894204 gattttaaaattaagggttaaatatgttttt 33894234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 6224840 - 6224891
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  6224840 catagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtg 6224891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 19254477 - 19254521
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  19254477 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 19254521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 31149689 - 31149740
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  31149689 catagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtg 31149740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 34718773 - 34718817
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  34718773 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 34718817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 41692457 - 41692501
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  41692457 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 41692501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 41983361 - 41983310
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  41983361 catagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtg 41983310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 41781061 - 41781015
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||    
T  41781061 caacccgcatatatgtatttatataatatgataaataatttatttat 41781015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 8643985 - 8644033
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||||| ||| |||||| |||| ||||||||||||||||||||    
T  8643985 cacaacccgcatatacatatttatataaaatgataaataatttatttat 8644033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 8805623 - 8805670
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttattta 53  Q
    |||||||||||| || ||||||| ||||||| ||||||||||||||||    
T  8805623 cacaacccgcatatatgtatttatataatattataaataatttattta 8805670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 52014221 - 52014175
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||||||| |||||||||||||    
T  52014221 caacccgcatatatgtatttatataatatgatagataatttatttat 52014175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 7250520 - 7250584
Alignment:
Q  112 ttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggtatgtgtacttaggtgccca 177  Q
    |||| ||||||||||||  ||||||||||| ||||||||||| ||||||| | |||||||| ||||    
T  7250520 ttcaattgtgatgttttt-attgtcttttcatagttaaagtgcaggtatgggcacttaggtaccca 7250584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 377
Target Start/End: Original strand, 1620434 - 1620462
Alignment:
Q  349 taaaattaagggttaaatatgtttttggt 377  Q
    |||||||||||||||||||||||||||||    
T  1620434 taaaattaagggttaaatatgtttttggt 1620462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 8080582 - 8080554
Alignment:
Q  349 taaaattaagggttaaatatgtttttggt 377  Q
    |||||||||||||||||||||||||||||    
T  8080582 taaaattaagggttaaatatgtttttggt 8080554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 8614902 - 8614854
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||| ||| ||| |||||| |||| ||||||||||||||||||||    
T  8614902 cacaacccacatatacatatttatataaaatgataaataatttatttat 8614854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 21297133 - 21297165
Alignment:
Q  22 gtatttaaataatatgataaataatttatttat 54  Q
    ||||||| |||||||||||||||||||||||||    
T  21297133 gtatttatataatatgataaataatttatttat 21297165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 21297269 - 21297325
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||| ||||| |||| || |||||||||  ||||||||||| |||||||||||    
T  21297269 ggatcataattttatttcaattatgatgttttttattgtcttttcatagttaaagtg 21297325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 34459619 - 34459670
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  34459619 catagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtg 34459670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 52802248 - 52802292
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  52802248 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 52802292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 53140738 - 53140694
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  53140738 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 53140694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 54442308 - 54442280
Alignment:
Q  349 taaaattaagggttaaatatgtttttggt 377  Q
    |||||||||||||||||||||||||||||    
T  54442308 taaaattaagggttaaatatgtttttggt 54442280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 27346970 - 27346924
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||    
T  27346970 caacccgcatatatgtatttatataatatgataaataatttatttat 27346924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 50622253 - 50622316
Alignment:
Q  98 gatcatagttttacttcagttgtgatg-ttttccattgtcttttcgtagttaaagtgtaggtat 160  Q
    ||||||||||||| |||| |||||||| ||||  ||||||||||| |||||||||||| |||||    
T  50622253 gatcatagttttatttcaattgtgatgtttttttattgtcttttcatagttaaagtgtgggtat 50622316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 10084970 - 10085016
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  10084970 caacccgcatctatgtatttatataatattataaataatttatttat 10085016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 10191890 - 10191936
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  10191890 caacccgcatctatgtatttatataatattataaataatttatttat 10191936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 14418560 - 14418514
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    ||||||| || ||| |||||| |||||||||||||||||||||||||    
T  14418560 caacccgtatatacatatttatataatatgataaataatttatttat 14418514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 19873201 - 19873144
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggta 159  Q
    |||||||||| |||| ||||||||||||  ||||||||||| ||||||||||| |||||    
T  19873201 catagttttatttcaattgtgatgttttt-attgtcttttcatagttaaagtgcaggta 19873144  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 32995631 - 32995585
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  32995631 caacccgcatatatgtatttatataatattataaataatttatttat 32995585  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 33558787 - 33558840
Alignment:
Q  99 atcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  33558787 atcatagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtg 33558840  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 36678817 - 36678863
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  36678817 caacccgcatatatgtatttatataatattataaataatttatttat 36678863  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 41410252 - 41410314
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggta 159  Q
    |||||||||||||| |||| ||||||||||||  ||||||||||| |||  ||||||| ||||    
T  41410252 ggatcatagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgtgggta 41410314  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 2150474 - 2150511
Alignment:
Q  23 tatttaaataatatgataaataatttatttatctattt 60  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  2150474 tatttatataatatgataaataatttatttatttattt 2150511  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 11671845 - 11671794
Alignment:
Q  101 catagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtg 153  Q
    |||||||||| |||| ||||||||||||  ||||||||||| |||||||||||    
T  11671845 catagttttatttcaattgtgatgtttt-tattgtcttttcatagttaaagtg 11671794  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 42096737 - 42096781
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  42096737 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 42096781  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 45079200 - 45079244
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  45079200 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 45079244  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 8754280 - 8754234
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||    
T  8754280 caacccgcatatatgtatttatataatatgataaataatttatttat 8754234  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 35005120 - 35005166
Alignment:
Q  10 acccgcatttacgtatttaaataatatgataaataatttatttatct 56  Q
    |||||||| ||| |||||| |||||||||||||||||||||||||||    
T  35005120 acccgcatatacatatttatataatatgataaataatttatttatct 35005166  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 2657197 - 2657151
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| |  ||||||| |||||||||||||||||||||||||    
T  2657197 caacccgcatatttgtatttatataatatgataaataatttatttat 2657151  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 8027214 - 8027260
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  8027214 caacccgcatatatgtatttatataatattataaataatttatttat 8027260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 12758106 - 12758060
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||| ||| ||| |||||| |||||||||||||||||||||||||    
T  12758106 caacccacatatacatatttatataatatgataaataatttatttat 12758060  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 42969423 - 42969377
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  42969423 caacccgcatatatgtatttatataatattataaataatttatttat 42969377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 12345252 - 12345296
Alignment:
Q  10 acccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||| || ||||||| ||||||| |||||||||||||||||    
T  12345252 acccgcatatatgtatttatataatattataaataatttatttat 12345296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 29527952 - 29527997
Alignment:
Q  9 aacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||    
T  29527952 aacccgcatatacatatttatataatatgataaataatttatttat 29527997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 377
Target Start/End: Original strand, 44625494 - 44625523
Alignment:
Q  348 ttaaaattaagggttaaatatgtttttggt 377  Q
    ||||||||||||||||||||||||||||||    
T  44625494 ttaaaattaagggttaaatatgtttttggt 44625523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 7017010 - 7016982
Alignment:
Q  349 taaaattaagggttaaatatgtttttggt 377  Q
    |||||||||||||||||||||||||||||    
T  7017010 taaaattaagggttaaatatgtttttggt 7016982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 14122166 - 14122138
Alignment:
Q  349 taaaattaagggttaaatatgtttttggt 377  Q
    |||||||||||||||||||||||||||||    
T  14122166 taaaattaagggttaaatatgtttttggt 14122138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 20216325 - 20216281
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  20216325 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 20216281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 20235923 - 20235879
Alignment:
Q  97 ggatcatagttttacttcagttgtgatgttttccattgtcttttc 141  Q
    |||||||||||||| |||| ||||||||||||  |||||||||||    
T  20235923 ggatcatagttttatttcaattgtgatgttttttattgtcttttc 20235879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 30801359 - 30801308
Alignment:
Q  102 atagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgt 154  Q
    |||||| || |||| ||||||||||||| ||||||||||| ||||||||||||    
T  30801359 atagttctatttcaattgtgatgttttc-attgtcttttcatagttaaagtgt 30801308  T

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Target: scaffold0938 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0938
Description:

Target: scaffold0938; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 882 - 834
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    ||||||| |||| || ||||||| |||||||||||||||||||||||||    
T  882 cacaacctgcatatatgtatttatataatatgataaataatttatttat 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0602 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0602
Description:

Target: scaffold0602; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 5355 - 5307
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||||| ||| |||||| |||| ||||||||||||||||||||    
T  5355 cacaacccgcatatacatatttatataaaatgataaataatttatttat 5307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 23570 - 23618
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    ||||||| |||| || ||||||| |||||||||||||||||||||||||    
T  23570 cacaacctgcatatatgtatttatataatatgataaataatttatttat 23618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 33738 - 33786
Alignment:
Q  6 cacaacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    ||||||| |||| || ||||||| |||||||||||||||||||||||||    
T  33738 cacaacctgcatatatgtatttatataatatgataaataatttatttat 33786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 20437 - 20394
Alignment:
Q  11 cccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    ||||||| || ||||||| |||||||||||||||||||||||||    
T  20437 cccgcatgtatgtatttatataatatgataaataatttatttat 20394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 109710 - 109756
Alignment:
Q  8 caacccgcatttacgtatttaaataatatgataaataatttatttat 54  Q
    |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  109710 caacccgcatatatgtatttatataatattataaataatttatttat 109756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 5868 - 5923
Alignment:
Q  103 tagttttacttcagttgtgatgttttccattgtcttttcgtagttaaagtgtaggta 159  Q
    |||||||| |||| ||||||||||||  ||||||||||| |||||||||||| ||||    
T  5868 tagttttatttcatttgtgatgttttt-attgtcttttcatagttaaagtgtgggta 5923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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