View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_low_47 (Length: 372)

Name: NF16592_low_47
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_low_47
NF16592_low_47
[»] chr4 (27 HSPs)
chr4 (203-372)||(1536943-1537112)
chr4 (17-176)||(1537100-1537255)
chr4 (226-303)||(1488549-1488626)
chr4 (291-370)||(7795297-7795375)
chr4 (291-370)||(7818434-7818513)
chr4 (77-159)||(1504444-1504526)
chr4 (299-369)||(15506563-15506633)
chr4 (299-369)||(25858361-25858431)
chr4 (299-370)||(43829553-43829623)
chr4 (293-368)||(55182819-55182894)
chr4 (299-370)||(55214901-55214972)
chr4 (299-370)||(55220586-55220657)
chr4 (297-370)||(614549-614620)
chr4 (293-370)||(1356344-1356421)
chr4 (329-370)||(38291220-38291261)
chr4 (299-370)||(46563782-46563852)
chr4 (297-340)||(49332176-49332219)
chr4 (329-372)||(56017776-56017819)
chr4 (329-370)||(19873415-19873456)
chr4 (329-370)||(20434831-20434872)
chr4 (329-370)||(20738466-20738507)
chr4 (329-370)||(52839050-52839091)
chr4 (329-370)||(56363422-56363463)
chr4 (74-139)||(1488691-1488752)
chr4 (299-370)||(10541412-10541484)
chr4 (297-345)||(27767674-27767722)
chr4 (297-345)||(56162474-56162522)
[»] chr1 (29 HSPs)
chr1 (291-369)||(9263595-9263672)
chr1 (299-370)||(2481955-2482026)
chr1 (299-370)||(49823918-49823989)
chr1 (293-370)||(33010005-33010082)
chr1 (299-370)||(6653828-6653898)
chr1 (299-370)||(15941562-15941633)
chr1 (273-368)||(24526919-24527014)
chr1 (299-370)||(34270066-34270137)
chr1 (299-370)||(34276301-34276372)
chr1 (293-370)||(11172642-11172719)
chr1 (329-370)||(39568710-39568751)
chr1 (293-370)||(40400744-40400821)
chr1 (299-370)||(13234624-13234695)
chr1 (299-370)||(24317898-24317968)
chr1 (299-370)||(26163825-26163895)
chr1 (299-370)||(40535951-40536022)
chr1 (293-364)||(42948915-42948986)
chr1 (299-370)||(44722624-44722695)
chr1 (299-370)||(52043699-52043769)
chr1 (298-340)||(8895623-8895665)
chr1 (298-340)||(20599678-20599720)
chr1 (330-368)||(24663556-24663594)
chr1 (329-370)||(14246574-14246615)
chr1 (291-368)||(32562244-32562321)
chr1 (329-370)||(39983089-39983130)
chr1 (329-370)||(52025369-52025410)
chr1 (297-345)||(13556076-13556124)
chr1 (297-345)||(25828676-25828724)
chr1 (297-345)||(40359666-40359714)
[»] chr6 (11 HSPs)
chr6 (267-372)||(7082268-7082374)
chr6 (299-368)||(6675124-6675193)
chr6 (299-372)||(6626050-6626123)
chr6 (307-372)||(8810023-8810088)
chr6 (301-360)||(13889132-13889191)
chr6 (297-368)||(13889337-13889407)
chr6 (300-340)||(33131221-33131261)
chr6 (299-370)||(6167281-6167351)
chr6 (329-370)||(29121690-29121731)
chr6 (297-345)||(5545372-5545420)
chr6 (297-345)||(32938484-32938532)
[»] chr3 (23 HSPs)
chr3 (293-370)||(10840685-10840762)
chr3 (293-370)||(41070603-41070680)
chr3 (293-370)||(36431035-36431112)
chr3 (299-370)||(22781106-22781177)
chr3 (299-370)||(25711647-25711718)
chr3 (299-370)||(37970970-37971041)
chr3 (329-370)||(6267630-6267671)
chr3 (299-370)||(7149264-7149335)
chr3 (297-340)||(17338565-17338608)
chr3 (297-340)||(22497240-22497283)
chr3 (299-370)||(32237019-32237090)
chr3 (299-370)||(33711981-33712051)
chr3 (297-340)||(43218756-43218799)
chr3 (291-372)||(8947089-8947170)
chr3 (329-370)||(672783-672824)
chr3 (293-370)||(7678679-7678756)
chr3 (293-370)||(24395918-24395995)
chr3 (299-372)||(26091063-26091136)
chr3 (329-370)||(33967638-33967679)
chr3 (291-368)||(52813814-52813891)
chr3 (329-370)||(53974991-53975032)
chr3 (300-372)||(9116460-9116531)
chr3 (297-345)||(48458386-48458434)
[»] chr8 (25 HSPs)
chr8 (299-370)||(26294442-26294513)
chr8 (299-370)||(26307699-26307770)
chr8 (299-370)||(39366002-39366073)
chr8 (299-368)||(39713412-39713481)
chr8 (299-370)||(17602367-17602438)
chr8 (299-370)||(26290062-26290133)
chr8 (299-370)||(26303319-26303390)
chr8 (299-370)||(26315313-26315384)
chr8 (299-369)||(3032227-3032297)
chr8 (266-367)||(32911165-32911266)
chr8 (300-372)||(40184732-40184804)
chr8 (293-372)||(7969212-7969291)
chr8 (299-370)||(11588820-11588891)
chr8 (299-370)||(15840513-15840584)
chr8 (299-370)||(16584425-16584496)
chr8 (329-372)||(23356615-23356658)
chr8 (299-370)||(34918156-34918227)
chr8 (299-369)||(37578944-37579014)
chr8 (294-335)||(13174235-13174276)
chr8 (298-347)||(29997495-29997544)
chr8 (291-368)||(44703927-44704004)
chr8 (333-369)||(1848305-1848341)
chr8 (297-345)||(5458260-5458308)
chr8 (308-372)||(35979310-35979373)
chr8 (297-345)||(45084245-45084293)
[»] chr2 (21 HSPs)
chr2 (299-370)||(25852682-25852753)
chr2 (266-368)||(43652900-43653002)
chr2 (299-372)||(37094780-37094853)
chr2 (299-370)||(1520937-1521008)
chr2 (299-370)||(32550907-32550978)
chr2 (291-372)||(932069-932150)
chr2 (293-370)||(1482585-1482662)
chr2 (299-370)||(927717-927787)
chr2 (297-340)||(2380374-2380417)
chr2 (299-370)||(2389964-2390034)
chr2 (299-370)||(15012511-15012581)
chr2 (299-370)||(21658639-21658709)
chr2 (299-370)||(34203023-34203093)
chr2 (299-370)||(35896474-35896545)
chr2 (299-370)||(39697108-39697179)
chr2 (299-370)||(40811018-40811089)
chr2 (299-370)||(43577651-43577721)
chr2 (270-368)||(31639708-31639806)
chr2 (329-370)||(3178959-3179000)
chr2 (329-370)||(44144128-44144169)
chr2 (297-345)||(19390649-19390697)
[»] scaffold0438 (1 HSPs)
scaffold0438 (299-370)||(1399-1470)
[»] chr7 (20 HSPs)
chr7 (297-372)||(8214956-8215031)
chr7 (299-370)||(35924849-35924920)
chr7 (291-369)||(37544971-37545049)
chr7 (291-371)||(30120982-30121062)
chr7 (299-370)||(21278297-21278368)
chr7 (299-370)||(21873790-21873861)
chr7 (299-370)||(32541426-32541496)
chr7 (299-370)||(38282960-38283031)
chr7 (299-370)||(39073685-39073756)
chr7 (297-340)||(40431363-40431406)
chr7 (297-340)||(42076335-42076378)
chr7 (74-104)||(7978312-7978342)
chr7 (300-370)||(10533360-10533430)
chr7 (329-370)||(19699739-19699780)
chr7 (329-370)||(40704781-40704822)
chr7 (329-370)||(42094825-42094866)
chr7 (297-361)||(42697407-42697472)
chr7 (329-370)||(46321383-46321424)
chr7 (329-370)||(46924622-46924663)
chr7 (329-370)||(47065211-47065252)
[»] scaffold0062 (1 HSPs)
scaffold0062 (293-370)||(41246-41323)
[»] scaffold0007 (1 HSPs)
scaffold0007 (291-368)||(200713-200789)
[»] chr5 (11 HSPs)
chr5 (297-370)||(24559803-24559876)
chr5 (299-370)||(6468998-6469069)
chr5 (297-340)||(8782767-8782810)
chr5 (299-370)||(9066402-9066472)
chr5 (299-370)||(19616907-19616978)
chr5 (291-359)||(24912750-24912820)
chr5 (299-369)||(31510739-31510808)
chr5 (296-361)||(36484662-36484728)
chr5 (293-370)||(19034004-19034081)
chr5 (297-370)||(24600836-24600908)
chr5 (329-370)||(38759719-38759760)
[»] scaffold0368 (1 HSPs)
scaffold0368 (293-364)||(14588-14659)
[»] scaffold0065 (1 HSPs)
scaffold0065 (293-370)||(37381-37458)
[»] scaffold0189 (1 HSPs)
scaffold0189 (297-345)||(27890-27938)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 203 - 372
Target Start/End: Complemental strand, 1537112 - 1536943
Alignment:
Q  203 gtgacaaactctgtttatcaatgaagtactgtgataattggataatgggctttttcaaatcaaagaattcttctactcacaacccagttatttttagtta 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1537112 gtgacaaactctgtttatcaatgaagtactgtgataattggataatgggctttttctaatcaaagaattcttctactcacaacccagttatttttagtta 1537013  T
Q  303 cacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1537012 cacccaaatttactaaaaattttacaataatactaaatctgcctttttatataaattttcttaaaacctt 1536943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 1537255 - 1537100
Alignment:
Q  17 aaatataaatctgattttgtttcagaaagagatggttgttgatggtattcagaactgtgagagagtttcttgttctcttccttttcatattgaatacgca 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||  |||||||||||||| ||||| |||||||| |||||||||      
T  1537255 aaatataaatctgattttgtttcagaaagagatggttgttgttggtattcagacatg--agagagtttcttgtcctctttcttttcattttgaatacg-- 1537160  T
Q  117 atttgtttagggtttacaatttgtctggttaagtttaggaagaaagagtgacaaactctg 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1537159 atttgtttagggtttacaatttgtctggttaagtttaggaagaaagagtgacaaactctg 1537100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 1488626 - 1488549
Alignment:
Q  226 aagtactgtgataattggataatgggctttttcaaatcaaagaattcttctactcacaacccagttatttttagttac 303  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||| |||| ||||| |||||||||||||||||||    
T  1488626 aagtactgtggtaattggataatgggctctttcaaatcaaacaattcatctaatcacaccccagttatttttagttac 1488549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 7795375 - 7795297
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| |||||||||||||||||| ||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||    
T  7795375 tatttctagttacacccaaatttattaaaatttt-ataataataccaaaactgccttttcatataaattttcttaaaacc 7795297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 7818513 - 7818434
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| |||||||||||||||||||| |||  |||| |||||||| |||||| || ||||||||||||||||||||||||    
T  7818513 tatttctagttacacccaaatttacttaaaaatttataataataccaaaacttccattttatataaattttcttaaaacc 7818434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 1504526 - 1504444
Alignment:
Q  77 gagagtttcttgttctcttccttttcatattgaatacgcaatttgtttagggtttacaatttgtctggttaagtttaggaaga 159  Q
    ||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||   ||||| |||||||||||    
T  1504526 gagagcttcttgtcctcttcgttttcatattgaatacgcgatttgtttagggtttacaacttggggggttaggtttaggaaga 1504444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 15506633 - 15506563
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaac 369  Q
    |||||||||||||||||| ||| ||||| |||||||| |||| |||| |||||||||||||||||||||||    
T  15506633 gttacacccaaatttacttaaaattttataataatacaaaaattgcccttttatataaattttcttaaaac 15506563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 25858431 - 25858361
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaac 369  Q
    ||||||||||||||| || ||||||||   |||||||||||| |||| |||||||||||||||||||||||    
T  25858431 gttacacccaaattttcttaaattttttttataatactaaaattgcccttttatataaattttcttaaaac 25858361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 43829553 - 43829623
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||  | |||||| |||| |||| ||||||||||||||||||||||||    
T  43829553 gttacacccaaattttcttaaattttttta-taataccaaaattgcccttttatataaattttcttaaaacc 43829623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 368
Target Start/End: Original strand, 55182819 - 55182894
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||| |||||| |||||||| || ||||||||   |||||| ||||| |||| ||||||||||||||||||||||    
T  55182819 tttttggttacatccaaattttcttaaattttttttataatattaaaattgcccttttatataaattttcttaaaa 55182894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 55214901 - 55214972
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  55214901 gttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 55214972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 55220657 - 55220586
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  55220657 gttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 55220586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 614620 - 614549
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  614620 tagttacacccaaattttcttaattttttt--ataataccaaaattgcccttttatataaattttcttaaaacc 614549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 1356344 - 1356421
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  1356344 tttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 1356421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 38291220 - 38291261
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  38291220 ataatactaaaattgcccttttatataaattttcttaaaacc 38291261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 46563782 - 46563852
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||  | |||||  |||| |||| ||||||||||||||||||||||||    
T  46563782 gttacacccaaattttcttaaattttttta-taatatcaaaattgcccttttatataaattttcttaaaacc 46563852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 49332219 - 49332176
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  49332219 tagttacacccaaatttatttaaatttttacaataataccaaaa 49332176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 56017776 - 56017819
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||    
T  56017776 ataataccaaaattgcccttttatataaattttcttaaaacctt 56017819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 19873415 - 19873456
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  19873415 ataataccaaaattgcccttttatataaattttcttaaaacc 19873456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 20434872 - 20434831
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  20434872 ataataccaaaattgcccttttatataaattttcttaaaacc 20434831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 20738507 - 20738466
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  20738507 ataataccaaaattgcccttttatataaattttcttaaaacc 20738466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 52839050 - 52839091
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  52839050 ataataccaaaattgcccttttatataaattttcttaaaacc 52839091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 56363463 - 56363422
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  56363463 ataataccaaaattgcccttttatataaattttcttaaaacc 56363422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 1488752 - 1488691
Alignment:
Q  74 tgagagagtttcttgttctcttccttttcatattgaatacgcaatttgtttagggtttacaatttg 139  Q
    ||||| ||||||||||| |||||||||||||||| ||    || ||||| ||||||||||||||||    
T  1488752 tgagaaagtttcttgttttcttccttttcatattcaa----cactttgtgtagggtttacaatttg 1488691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 10541412 - 10541484
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcc-tttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| |||||||||||||||||||||||||    
T  10541412 gttacacccaaattttcttaaaagttttttataataccaaaattgccctttttatataaattttcttaaaacc 10541484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 27767722 - 27767674
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  27767722 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 27767674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 56162474 - 56162522
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  56162474 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 56162522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 9263672 - 9263595
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaac 369  Q
    |||||||||||||||| || |||||| ||| |||||  | |||||||||||||||||||||||||||||||||||||||    
T  9263672 tatttttagttacacctaa-tttacttaaaattttattacaatactaaaactgcctttttatataaattttcttaaaac 9263595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 2481955 - 2482026
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  2481955 gttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaacc 2482026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 49823989 - 49823918
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||| |||||||||| || ||||||||   ||||||| |||| |||||||||||||||||||||||||||||    
T  49823989 gttatacccaaattttcttaaattttttttataataccaaaattgcctttttatataaattttcttaaaacc 49823918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 33010005 - 33010082
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || ||||||||   ||||||| |||| |||| ||||| ||||||||||||||||||    
T  33010005 tttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttacataaattttcttaaaacc 33010082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 6653898 - 6653828
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | ||||||||||| |||| ||||||||||||||||||||||||    
T  6653898 gttacacccaaattttcttaatttttttta-taatactaaaattgcccttttatataaattttcttaaaacc 6653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 15941633 - 15941562
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||| ||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  15941633 gttacacccaaattttcttaaaatttttttataataccaaaattgcccttttatataaattttcttaaaacc 15941562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 24526919 - 24527014
Alignment:
Q  273 ttctactcacaacccagttatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||| ||||| ||||  ||||||| |||||| |||||||| || |||  |||  |||||||| |||| |||| ||||||||||||||||||||||    
T  24526919 ttctattcacatcccatatatttttggttacatccaaattttcttaaaagtttttaataataccaaaattgcccttttatataaattttcttaaaa 24527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 34270066 - 34270137
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||| |||||||| || ||||||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  34270066 gttacatccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaacc 34270137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 34276301 - 34276372
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||| |||||||| || ||||||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  34276301 gttacatccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaacc 34276372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 11172642 - 11172719
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  11172642 tttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 11172719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 39568710 - 39568751
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||||||||||||||||||||||||||||    
T  39568710 ataataccaaaattgcctttttatataaattttcttaaaacc 39568751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 40400821 - 40400744
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  40400821 tttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 40400744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 13234624 - 13234695
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  13234624 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 13234695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 24317968 - 24317898
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | |||||| |||| |||| ||||||||||||||||||||||||    
T  24317968 gttacacccaaattttcttaatttttttta-taataccaaaattgcccttttatataaattttcttaaaacc 24317898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 26163825 - 26163895
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | ||| || |||| |||||||||||||||||||||||||||||    
T  26163825 gttacacccaaattttcttaatttttttta-taacaccaaaattgcctttttatataaattttcttaaaacc 26163895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 40535951 - 40536022
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  40535951 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 40536022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 42948986 - 42948915
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttctt 364  Q
    ||||| ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||    
T  42948986 tttttggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctt 42948915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 44722695 - 44722624
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||   ||||||  |||| |||| ||||||||||||||| ||||||||    
T  44722695 gttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaatttttttaaaacc 44722624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 52043699 - 52043769
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||  | |||||| |||| |||| ||||||||||||||||||| ||||    
T  52043699 gttacacccaaattttcttaaattttttta-taataccaaaattgcccttttatataaattttcttagaacc 52043769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 8895623 - 8895665
Alignment:
Q  298 agttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    ||||||||||||||||| | ||| |||||||||||||||||||    
T  8895623 agttacacccaaatttatttaaaattttacaataatactaaaa 8895665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 20599720 - 20599678
Alignment:
Q  298 agttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    ||||||||||||||||| | ||| |||||||||||||||||||    
T  20599720 agttacacccaaatttatttaaaattttacaataatactaaaa 20599678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 24663556 - 24663594
Alignment:
Q  330 taatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  24663556 taatactaaaattgcccttttatataaattttcttaaaa 24663594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 14246574 - 14246615
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  14246574 ataataccaaaattgcccttttatataaattttcttaaaacc 14246615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 32562321 - 32562244
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||||| ||||||||||  |||  |||||  |||  ||||||||||||| || | ||||||||||||||||||||||    
T  32562321 tattttttgttacacccagtttttttaaaaagtttttaataatactaaaattgtccttttatataaattttcttaaaa 32562244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 39983130 - 39983089
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  39983130 ataataccaaaattgcccttttatataaattttcttaaaacc 39983089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 52025410 - 52025369
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  52025410 ataataccaaaattgcccttttatataaattttcttaaaacc 52025369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 13556076 - 13556124
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  13556076 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 13556124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 25828676 - 25828724
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  25828676 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 25828724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 40359666 - 40359714
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  40359666 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 40359714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 372
Target Start/End: Complemental strand, 7082374 - 7082268
Alignment:
Q  267 gaattcttctactcacaacccagttatttttagttacacc-caaatttactaaaatttttacaataatactaaaactgcctttttatataaattttctta 365  Q
    ||||| ||||| ||||| ||||  ||||||| |||| ||| |||||||||| |||  ||||||||||||| |||| || |||||||||||||||||||||    
T  7082374 gaatttttctattcacaccccatatattttttgttaaacctcaaatttacttaaaagtttacaataatacaaaaattgtctttttatataaattttctta 7082275  T
Q  366 aaacctt 372  Q
    || ||||    
T  7082274 aagcctt 7082268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 6675124 - 6675193
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    |||||||| ||||||||| |||  |||| ||||||||||||| |||||||||||||||||| ||||||||    
T  6675124 gttacaccaaaatttacttaaaagtttataataatactaaaattgcctttttatataaattatcttaaaa 6675193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 6626123 - 6626050
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||||||||||| || ||||||||   ||||||  |||| |||| ||||||||||||||||||||||||||    
T  6626123 gttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaattttcttaaaacctt 6626050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 8810023 - 8810088
Alignment:
Q  307 caaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    |||||||||| |||  ||||||||||||| ||||||| |||||| |||||||||||||||| ||||    
T  8810023 caaatttacttaaaagtttacaataatacaaaaactgtctttttctataaattttcttaaagcctt 8810088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 13889191 - 13889132
Alignment:
Q  301 tacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattt 360  Q
    |||||| ||||||||| ||| |||||||||||||| |||| || ||||||||||||||||    
T  13889191 tacacctaaatttacttaaaattttacaataataccaaaattgtctttttatataaattt 13889132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 13889337 - 13889407
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||||||||||||||| || ||||||||  | |||||| |||| |||| ||||||||||||||||||||||    
T  13889337 tagttacacccaaattttcttaaattttttta-taataccaaaattgcccttttatataaattttcttaaaa 13889407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 33131261 - 33131221
Alignment:
Q  300 ttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  33131261 ttacacccaaatttatttaaatttttacaataatactaaaa 33131221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 6167281 - 6167351
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | |||||| |||| |||| ||||||||||||||||||||||||    
T  6167281 gttacacccaaattttcttaatttttttta-taatacaaaaattgcccttttatataaattttcttaaaacc 6167351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 29121690 - 29121731
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  29121690 ataataccaaaattgcccttttatataaattttcttaaaacc 29121731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 5545372 - 5545420
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  5545372 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 5545420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 32938532 - 32938484
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  32938532 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 32938484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 10840685 - 10840762
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || ||||||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  10840685 tttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaacc 10840762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 41070680 - 41070603
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || ||||||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  41070680 tttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaacc 41070603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 36431112 - 36431035
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || ||||||||   ||||||| |||| || | ||||||||||||||||||||||||    
T  36431112 tttttggttacacccaaattttcttaaattttttttataataccaaaattgtccttttatataaattttcttaaaacc 36431035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 22781106 - 22781177
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||   ||||||| |||| |||  ||||||||||||||||||||||||    
T  22781106 gttacacccaaattttcttaaattttttttataataccaaaattgctcttttatataaattttcttaaaacc 22781177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 25711718 - 25711647
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||| ||||   ||||||| |||| | |||||||||||||||||||||||||||    
T  25711718 gttacacccaaattttcttaaaatttttttataataccaaaattacctttttatataaattttcttaaaacc 25711647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 37970970 - 37971041
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  37970970 gttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 37971041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 6267630 - 6267671
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  6267630 ataatactaaaattgccattttatataaattttcttaaaacc 6267671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 7149264 - 7149335
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  7149264 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 7149335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 17338608 - 17338565
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  17338608 tagttacacccaaatttatttaaatttttacaataataccaaaa 17338565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 22497240 - 22497283
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  22497240 tagttacacccaaatttatttaaatttttacaataataccaaaa 22497283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 32237090 - 32237019
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  32237090 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 32237019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 33711981 - 33712051
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||  | |||||| |||| |||| |||||||||||| |||||||||||    
T  33711981 gttacacccaaattttcttaaattttttta-taataccaaaattgcccttttatataaatattcttaaaacc 33712051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 43218756 - 43218799
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  43218756 tagttacacccaaatttatttaaatttttacaataataccaaaa 43218799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 8947089 - 8947170
Alignment:
Q  291 tatttttagttacacccaaatttac-taaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||| |||||| |||||||| | ||||| ||||  |||||||| | || |||||||||||||||||||| ||||||||||    
T  8947089 tatttttggttacatccaaattttcataaaagttttt-aataataccacaattgcctttttatataaatttttttaaaacctt 8947170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 672824 - 672783
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  672824 ataataccaaaattgcccttttatataaattttcttaaaacc 672783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 7678679 - 7678756
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || |||  |||   ||||||  |||| |||| ||||||||||||||||||||||||    
T  7678679 tttttggttacacccaaattttcttaaaagttttttataatatcaaaattgcccttttatataaattttcttaaaacc 7678756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 24395995 - 24395918
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || |||  |||   ||||||| |||| |||| || |||||||||||||||||||||    
T  24395995 ttttttgttacacccaaattttcttaaaagttttttataataccaaaattgcccttatatataaattttcttaaaacc 24395918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 26091136 - 26091063
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||||||||||| || |||  |||   ||||||| |||| || | ||||||||||||||||||||||||||    
T  26091136 gttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaattttcttaaaacctt 26091063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 33967679 - 33967638
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  33967679 ataataccaaaattgcccttttatataaattttcttaaaacc 33967638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 52813891 - 52813814
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||||| ||||||||||| |||  |||||  |||   ||||||| ||||||| | ||||||||||||||||||||||    
T  52813891 tatttttggttacacccaatttttttaaaaagtttttgataataccaaaactgtccttttatataaattttcttaaaa 52813814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 53975032 - 53974991
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  53975032 ataataccaaaattgcccttttatataaattttcttaaaacc 53974991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 9116531 - 9116460
Alignment:
Q  300 ttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||||||||||||| ||| ||||||||||||||  ||||  ||| || || |||||||| ||||||||||    
T  9116531 ttacacccaaatttacttaaaattttacaataataccgaaaccacctcttaatgtaaatttt-ttaaaacctt 9116460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 48458386 - 48458434
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  48458386 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 48458434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 26294442 - 26294513
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  26294442 gttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaacc 26294513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 26307699 - 26307770
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  26307699 gttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaacc 26307770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 39366073 - 39366002
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||| ||||   |||||||||||| |||| ||||||||||||||||||||||||    
T  39366073 gttacacccaaattttcttaaaatttttttataatactaaaattgcccttttatataaattttcttaaaacc 39366002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 39713481 - 39713412
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||||||||||||| || |||  |||  |||||||| |||| |||||||||||||||||||||||||||    
T  39713481 gttacacccaaattttcttaaaagtttttaataataccaaaattgcctttttatataaattttcttaaaa 39713412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 17602438 - 17602367
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   |||||||||||| |||| ||||||||||||||||||||||||    
T  17602438 gttacacccaaattttcttaaaagttttttataatactaaaattgcccttttatataaattttcttaaaacc 17602367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 26290062 - 26290133
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  26290062 gttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 26290133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 26303319 - 26303390
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  26303319 gttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 26303390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 26315313 - 26315384
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  26315313 gttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 26315384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 3032227 - 3032297
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaac 369  Q
    |||| |||||||||| || || |||||   ||||||| ||||||||| |||||||||||||||||||||||    
T  3032227 gttatacccaaattttcttaatttttttttataataccaaaactgcccttttatataaattttcttaaaac 3032297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 32911266 - 32911165
Alignment:
Q  266 agaattcttctactcacaacccagttatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttctta 365  Q
    |||||| |||||||| || ||||  ||||| | ||||||| |||||||||| ||  ||||||||||| || | || |||  |||||||||||||||||||    
T  32911266 agaatttttctactcgcaccccatgtatttatggttacacacaaatttacttaagattttacaataacaccataattgctcttttatataaattttctta 32911167  T
Q  366 aa 367  Q
    ||    
T  32911166 aa 32911165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 40184804 - 40184732
Alignment:
Q  300 ttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    |||||||||||||| || |||  |||| ||||||||  ||| |||| ||||||||||||| ||||||||||||    
T  40184804 ttacacccaaattttcttaaaagtttataataataccgaaattgccattttatataaattatcttaaaacctt 40184732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 372
Target Start/End: Original strand, 7969212 - 7969291
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||| |||||||||||||||  | |||| |||   |||||  ||||| || ||||||||||||||||||||||||||||    
T  7969212 tttttggttacacccaaattttttgaaatattttttataatgttaaaattgtctttttatataaattttcttaaaacctt 7969291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 11588891 - 11588820
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  11588891 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 11588820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 15840584 - 15840513
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| ||| |||||||||||||||||||||||||    
T  15840584 gttacacccaaattttcttaaaagttttttataataccaaaattgcttttttatataaattttcttaaaacc 15840513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 16584425 - 16584496
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||||||||||||||| ||| ||||| |||||||| |||| | |  |||||| |||||||||| ||||||    
T  16584425 gttacacccaaatttacttaaaattttataataataccaaaatttctcttttatgtaaattttctcaaaacc 16584496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 23356615 - 23356658
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||    
T  23356615 ataataccaaaattgcccttttatataaattttcttaaaacctt 23356658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 34918227 - 34918156
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||| ||||   ||||||| |||| || | ||||||||||||||||||||||||    
T  34918227 gttacacccaaattttcttaaaatttttttataataccaaaattgtccttttatataaattttcttaaaacc 34918156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 37579014 - 37578944
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaac 369  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| |||||||||||||||||||||||    
T  37579014 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 37578944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 13174235 - 13174276
Alignment:
Q  294 ttttagttacacccaaatttactaaaatttttacaataatac 335  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  13174235 ttttagttacactcaaatttacttaaaattttacaataatac 13174276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 29997495 - 29997544
Alignment:
Q  298 agttacacccaaatttactaaaatttttacaataatactaaaactgcctt 347  Q
    ||||||||||||||||| | ||| |||||||||||||| |||| ||||||    
T  29997495 agttacacccaaatttatttaaaattttacaataataccaaaattgcctt 29997544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 44703927 - 44704004
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||||| ||||||||||  |||  ||||||||||   |||||| ||||| || | ||||||||||||||||||||||    
T  44703927 tattttttgttacacccagtttttttaaaatttttttgataatattaaaattgtccttttatataaattttcttaaaa 44704004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 1848305 - 1848341
Alignment:
Q  333 tactaaaactgcctttttatataaattttcttaaaac 369  Q
    |||||||| |||| |||||||||||||||||||||||    
T  1848305 tactaaaattgcccttttatataaattttcttaaaac 1848341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 5458260 - 5458308
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  5458260 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 5458308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 35979310 - 35979373
Alignment:
Q  308 aaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||||| ||||||| ||||||||||||||| |    ||||||||||||||| ||||||||||    
T  35979310 aaatttacttaaatttt-acaataatactaaaattattcttttatataaatttttttaaaacctt 35979373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 45084245 - 45084293
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  45084245 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 45084293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 25852682 - 25852753
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  25852682 gttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaacc 25852753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 43652900 - 43653002
Alignment:
Q  266 agaattcttctactcacaacccagttatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttctta 365  Q
    |||||| ||||| ||||| ||||  ||||| | |||| ||||||||||| | ||| ||||||||||||||||||| |   |||||||||||||||||| |    
T  43652900 agaatttttctagtcacaccccatatatttctggttatacccaaatttatttaaaattttacaataatactaaaattatatttttatataaattttctca 43652999  T
Q  366 aaa 368  Q
    |||    
T  43653000 aaa 43653002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 37094853 - 37094780
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||||||||||| || |||||| |   ||||||| |||| |||| ||||||||||||||||||||||||||    
T  37094853 gttacacccaaattttcttaaatttgttttataataccaaaattgcccttttatataaattttcttaaaacctt 37094780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 1521008 - 1520937
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||   ||||||| |||| || | ||||||||||||||||||||||||    
T  1521008 gttacacccaaattttcttaaattttttttataataccaaaattgtccttttatataaattttcttaaaacc 1520937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 32550907 - 32550978
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||||||||||||||||||||||||||||    
T  32550907 gttacacccaaattttcttaaaagttttttataataccaaaattgcctttttatataaattttcttaaaacc 32550978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 932069 - 932150
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||| |||||||||||| |||||||  || ||||| |||||||| |||| || | ||||||||||||||| || |||||||    
T  932069 tatttctagttacacccatatttactttaaattttataataataccaaaattgtccttttatataaatttttttgaaacctt 932150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 1482662 - 1482585
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||||||||| || || |||||   ||||||  |||| | || ||||||||||||||||||||||||    
T  1482662 tttttagttacacccaaattttcttaatttttttttataatatcaaaattacccttttatataaattttcttaaaacc 1482585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 927787 - 927717
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | |||||| |||| |||| ||||||||||||||||||||||||    
T  927787 gttacacccaaattttcttaatttttttta-taataccaaaattgcccttttatataaattttcttaaaacc 927717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 2380417 - 2380374
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  2380417 tagttacacccaaatttatttaaatttttacaataataccaaaa 2380374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 2389964 - 2390034
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||  | |||||| |||| |||| |||||||||| |||||||||||||    
T  2389964 gttacacccaaattttcttaaattttttta-taataccaaaattgcccttttatataatttttcttaaaacc 2390034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 15012581 - 15012511
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | |||||| |||| |||| ||||||||||||||||||||||||    
T  15012581 gttacacccaaattttcttaatttttttta-taatacgaaaattgcccttttatataaattttcttaaaacc 15012511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 21658709 - 21658639
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||  | |||||| |||| |||| |||||||||| |||||||||||||    
T  21658709 gttacacccaaattttcttaaattttttta-taataccaaaattgcccttttatataatttttcttaaaacc 21658639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 34203093 - 34203023
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | ||||||||||| | || ||||||||||||||||||||||||    
T  34203093 gttacacccaaattttcttaatttttttta-taatactaaaatttcccttttatataaattttcttaaaacc 34203023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 35896545 - 35896474
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  35896545 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 35896474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 39697108 - 39697179
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||| |||||||| || ||||||||   ||||||| |||| || | ||||||||||||||||||||||||    
T  39697108 gttacatccaaattttcttaaattttttttataataccaaaattgtcattttatataaattttcttaaaacc 39697179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 40811018 - 40811089
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||| |||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  40811018 gttacatccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 40811089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 43577721 - 43577651
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | |||||| |||| |||| ||||||||||||||||||||||||    
T  43577721 gttacacccaaattttcttaatttttttta-taataccaaaattgcccttttatataaattttcttaaaacc 43577651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 368
Target Start/End: Original strand, 31639708 - 31639806
Alignment:
Q  270 ttcttctactcacaacccagttatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    |||||||| ||||| ||||  ||||| | |||||| |||||| | || |||  |||  |||||||| |||| |||| ||||||||||||||||||||||    
T  31639708 ttcttctattcacaccccatatatttctggttacatccaaatgttcttaaaagtttttaataataccaaaattgcccttttatataaattttcttaaaa 31639806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 3179000 - 3178959
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  3179000 ataataccaaaattgcccttttatataaattttcttaaaacc 3178959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 44144169 - 44144128
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  44144169 ataataccaaaattgcccttttatataaattttcttaaaacc 44144128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 19390697 - 19390649
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  19390697 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 19390649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 1399 - 1470
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  1399 gttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 1470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 8214956 - 8215031
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacctt 372  Q
    ||||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||||    
T  8214956 tagttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacctt 8215031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 35924920 - 35924849
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||   ||||||  |||| |||| ||||||||||||||||||||||||    
T  35924920 gttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaattttcttaaaacc 35924849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 37545049 - 37544971
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaac 369  Q
    ||||||| ||||||||||| |||||| ||| ||| |||||||||  |||| || | |||||||||||||||||| ||||    
T  37545049 tattttttgttacacccaattttacttaaaatttaacaataatatcaaaattgtccttttatataaattttcttcaaac 37544971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 30120982 - 30121062
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacct 371  Q
    ||||||| |||| | ||||||||||||  | |||||||||||||| |||| || | ||||||||||||||  |||||||||    
T  30120982 tatttttggttatatccaaatttactatgaattttacaataataccaaaattgtccttttatataaatttctttaaaacct 30121062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 21278297 - 21278368
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||||| |||||| || ||| ||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  21278297 gttacacctaaattttcttaaaatttttttataataccaaaattgcccttttatataaattttcttaaaacc 21278368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 21873790 - 21873861
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  21873790 gttacacccaaattttcttaaaacttttttataataccaaaattgcccttttatataaattttcttaaaacc 21873861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 32541426 - 32541496
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || || |||||  | |||||| |||| |||| ||||||||||||||||||||||||    
T  32541426 gttacacccaaattttcttaatttttttta-taataccaaaattgcccttttatataaattttcttaaaacc 32541496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 38282960 - 38283031
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  38282960 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 38283031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 39073685 - 39073756
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  39073685 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 39073756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 40431406 - 40431363
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  40431406 tagttacacccaaatttatttaaatttttacaataataccaaaa 40431363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 42076335 - 42076378
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    |||||||||||||||||| | |||||||||||||||||| ||||    
T  42076335 tagttacacccaaatttatttaaatttttacaataataccaaaa 42076378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 7978312 - 7978342
Alignment:
Q  74 tgagagagtttcttgttctcttccttttcat 104  Q
    |||||||||||||||||||||||||||||||    
T  7978312 tgagagagtttcttgttctcttccttttcat 7978342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 10533430 - 10533360
Alignment:
Q  300 ttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| |||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  10533430 ttacatccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaacc 10533360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 19699780 - 19699739
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  19699780 ataataccaaaattgcccttttatataaattttcttaaaacc 19699739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 40704781 - 40704822
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  40704781 ataataccaaaattgcccttttatataaattttcttaaaacc 40704822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 42094825 - 42094866
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  42094825 ataataccaaaattgcccttttatataaattttcttaaaacc 42094866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 42697407 - 42697472
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactg-cctttttatataaatttt 361  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| || ||| ||||| ||||||||    
T  42697407 tagttacacccaaatttatttaaaattttacaataataccaaaattgtcctctttatgtaaatttt 42697472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 46321383 - 46321424
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  46321383 ataataccaaaattgcccttttatataaattttcttaaaacc 46321424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 46924663 - 46924622
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  46924663 ataataccaaaattgcccttttatataaattttcttaaaacc 46924622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 47065211 - 47065252
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  47065211 ataataccaaaattgcccttttatataaattttcttaaaacc 47065252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 41323 - 41246
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || || |||||   ||||||  |||| |||| ||||||||||||||||||||||||    
T  41323 tttttggttacacccaaattttcttaatttttttttataatatcaaaattgcccttttatataaattttcttaaaacc 41246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 200789 - 200713
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaa 368  Q
    ||||||| ||||||||||| |||  ||||| ||||  ||||||||||||| || | ||||||||||||||||||||||    
T  200789 tatttttggttacacccaatttttttaaaagttttt-aataatactaaaattgtcattttatataaattttcttaaaa 200713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 24559876 - 24559803
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||||| || ||||||||   ||||||| |||| || | | ||||||||||||||||||||||    
T  24559876 tagttacacccaaattttcttaaattttttttataataccaaaattgtcctattatataaattttcttaaaacc 24559803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 6468998 - 6469069
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  6468998 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 6469069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 8782810 - 8782767
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaa 340  Q
    |||||||||||||||||| | ||| |||||||||||||||||||    
T  8782810 tagttacacccaaatttatttaaaattttacaataatactaaaa 8782767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 9066472 - 9066402
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || ||||||||  | |||||| |||| |||| ||||||||||||||||||| ||||    
T  9066472 gttacacccaaattttcttaaattttttta-taatacaaaaattgcccttttatataaattttcttagaacc 9066402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 19616907 - 19616978
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||| || |||  |||   ||||||| |||| |||| ||||||||||||||||||||||||    
T  19616907 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 19616978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 24912820 - 24912750
Alignment:
Q  291 tatttttagttacacccaaatttactaaaatttttacaataatactaaaactgcc--tttttatataaatt 359  Q
    ||||||| |||||| ||||||||||| |||  |||||| ||||||||||| ||||  ||||||||||||||    
T  24912820 tatttttcgttacatccaaatttacttaaaagtttacattaatactaaaattgcccttttttatataaatt 24912750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 31510739 - 31510808
Alignment:
Q  299 gttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaac 369  Q
    ||||||||||||||| || ||||||||  | |||||  |||| |||| |||||||||||||||||||||||    
T  31510739 gttacacccaaattttcttaaattttttta-taatatcaaaattgcccttttatataaattttcttaaaac 31510808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 36484728 - 36484662
Alignment:
Q  296 ttagttacacccaaatttactaaaatttttacaataatactaaaactg-cctttttatataaatttt 361  Q
    ||||||||||| ||||||| | |||||||||||||||||| |||| || |||||| || ||||||||    
T  36484728 ttagttacacctaaatttatttaaatttttacaataataccaaaattgtccttttcatgtaaatttt 36484662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 19034004 - 19034081
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    |||||||||||||| ||||||  | ||||||||   ||||||| |||| |||  ||||||||||||||| ||||||||    
T  19034004 tttttagttacacctaaatttttttaaattttttttataataccaaaattgctcttttatataaatttttttaaaacc 19034081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 24600908 - 24600836
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||||||||||||| || ||||||||  | |||||| |||| || | | ||||||||||||||||||||||    
T  24600908 tagttacacccaaattttcttaaattttttta-taataccaaaattgtcctattatataaattttcttaaaacc 24600836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 38759719 - 38759760
Alignment:
Q  329 ataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||||| |||| |||| ||||||||||||||||||||||||    
T  38759719 ataataccaaaattgcccttttatataaattttcttaaaacc 38759760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 14659 - 14588
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttctt 364  Q
    ||||| ||||||||||||||| || || |||||   ||||||| |||| |||| ||||||||||||||||||    
T  14659 tttttggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctt 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 37381 - 37458
Alignment:
Q  293 tttttagttacacccaaatttactaaaatttttacaataatactaaaactgcctttttatataaattttcttaaaacc 370  Q
    ||||| ||||||||||||||| || |||  |||   ||||||  |||| |||| ||||||||||||||||||||||||    
T  37381 tttttggttacacccaaattttcttaaaagttttttataatatcaaaattgcccttttatataaattttcttaaaacc 37458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 27938 - 27890
Alignment:
Q  297 tagttacacccaaatttactaaaatttttacaataatactaaaactgcc 345  Q
    |||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  27938 tagttacacccaaatttatttaaaattttacaataataccaaaattgcc 27890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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