View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_48 (Length: 371)
Name: NF16592_low_48
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 40533740 - 40533401
Alignment:
| Q |
12 |
caaaggcaaagtcttattgccaccagaaggcaagatgggcgtggaccaagatatgagagatgtaaccaaattttcaatctcatcttaatttaatttacct |
111 |
Q |
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| T |
40533740 |
caaaggcaaagtcttattgccaccagaaggcaagatgggcgtggaccaagatatgagagatgtaaccaaattttcaatctcatctt---ttaatttacct |
40533644 |
T |
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| Q |
112 |
agtaatagatg--atgatataactatattcatataaatatgtaggttgaagtgagtgccacgccagtgggatcagttagtgaatgtgcaaaatcaatagt |
209 |
Q |
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| T |
40533643 |
agtaatacatgctataacataactatattcatataaatatgtaggttgaagtgagtgccacgccagtgggatcagttagtgaatgtgcaaaatcaatagt |
40533544 |
T |
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| Q |
210 |
gaatggtacattgaggggagatagatacttgactgcaccagcttggtttagaatgacatatgttgtgaaagtgttatgtccagaattgttggagtggggt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40533543 |
gaatggtacattgaggggagatagatacttgactgcaccagcttggtttagaatgacatatgttgtgaaagtgttatgtccagaattgttggagtggggt |
40533444 |
T |
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| Q |
310 |
ttcagattcttgtacttgacaagatcaagtaatactccagcaa |
352 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
40533443 |
ttcagaatcttgtacttgactagatcaagtaatactccagcaa |
40533401 |
T |
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