View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_5 (Length: 663)
Name: NF16592_low_5
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 16 - 654
Target Start/End: Complemental strand, 24046312 - 24045673
Alignment:
| Q |
16 |
caccttgaacaccagtaaggttagaaatattagctctttgaaccaaagaagcaatctgtttacatgccaacgaaatactattcaaaacaatagtaagttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24046312 |
caccttgaacaccagtaaggttagaaatattagctctttgaaccaaagaagcaatctgtttacatgccaacgaaatactattcaaaacaatagtaagttc |
24046213 |
T |
|
| Q |
116 |
agcatcaataacccctgtttgttcttgcttcaacaaccaactagtcaatgttataagctcataactacttcttttctttgtctcagcagctacttcacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24046212 |
agcatcaataacccctgtttgttcttgcttcaacaaccaactagtcaatgttataagctcataactacttcttttctttgtctcagcagctacttcacca |
24046113 |
T |
|
| Q |
216 |
atagccatgcatctcactcctccagagccactcacatgctttcttcttgaacttgataacactgatttcgtgtcgaaaacacaaagttggaagggacata |
315 |
Q |
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| T |
24046112 |
acagccatgcatctcactcctccagagccactcacatgctttcttcttgaacttgataacactgatttcgtgtcgaaaacacaaagttggaagggacata |
24046013 |
T |
|
| Q |
316 |
gacgtgagggagaacaaggttttgagaatattaattgtgatgatgctgttgctgctgccattgcaaccatttttgttgaaatttgcactagtgtgtttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24046012 |
gacgtgagggagaacaaggttttgagaatattaattgtgatgatgctgttgctgctgccattgcaaccatttttgttgaaatttgcactagtgtgtttct |
24045913 |
T |
|
| Q |
416 |
aggggtgaatgagttgcatggatggattgtgttgtaaggtactgaaggaaaagagattgtaaggttcgtaatggtttgtgatactattggtcccacttat |
515 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24045912 |
agtggtgaatgagttgcatggatggattgtgttgtaaggtactgaaggaaaagagattgtaaggttcgtaatggtttgtgatactattggtcccacttat |
24045813 |
T |
|
| Q |
516 |
cttcttcatatcattttgc-tttgtgattgtggattccaatggttctgttttgccacggtggannnnnnnnnnnnnnnnncttgaatgaaaaggtagtct |
614 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24045812 |
cttcttcatatcattttgcttttgtgattgtggattccaatggttctgttttgccacggtggattttttgtctgttttttcttgaatgaaaaggtagtct |
24045713 |
T |
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| Q |
615 |
taacaattttaaaactaatttatgcctttttaagtattat |
654 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24045712 |
taacaattttaaaactaatttatgcctttttaagtattat |
24045673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 24069042 - 24068980
Alignment:
| Q |
33 |
aggttagaaatattagctctttgaaccaaagaagcaatctgtttacatgccaacgaaatacta |
95 |
Q |
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|||||||||||||||||| |||||| ||||||| |||| || |||||||||| ||||||||| |
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| T |
24069042 |
aggttagaaatattagctatttgaatcaaagaaacaatttgcttacatgccatggaaatacta |
24068980 |
T |
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