View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_52 (Length: 359)
Name: NF16592_low_52
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 100 - 341
Target Start/End: Original strand, 1778532 - 1778773
Alignment:
| Q |
100 |
gtaagcaatgtacgatggtttttacattataaattagttaaacacacattttgtttctattacatacaaaagaggaaaaatatggccggaattttcaatt |
199 |
Q |
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| T |
1778532 |
gtaagcaatgtacgatggtttttacattataaattagttaaacacacattttgtttctattacatacaaaagaggaaaaatatggccggaattttcaatt |
1778631 |
T |
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| Q |
200 |
tggtttatgttatggtcctctttctttcactgttcaatgctataataaatgtcgatggtaagcacctttttaagcttcttattaaccttagaccatccac |
299 |
Q |
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| T |
1778632 |
tggtttatgttatggtcctctttctttcactgttcaatgctataataaatgtcgatggtaagcacctttttaagcttcttattaaccttagaccatccac |
1778731 |
T |
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| Q |
300 |
aaataggcacctctttctcttcatttttcatgggtcatattt |
341 |
Q |
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| T |
1778732 |
aaataggcacctctttctcttcatttttcatgggtcatattt |
1778773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 1772236 - 1772518
Alignment:
| Q |
7 |
catattgaaatatttatcggatatgttatgataattttaattttacatatgatatcttgtaacaagtgacatttctttnnnnnnnnnnnnnnngtaagca |
106 |
Q |
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| T |
1772236 |
catattgaaatatttataagacatgttatgataattttaattttacatatggtttcttccaacaagtgacaattctttataaaataaaaaaacctaagca |
1772335 |
T |
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| Q |
107 |
atgtacgatggtttttacattataaattagttaaacacacattttgtttctattacatacaaaagaggaaaaatatggccggaattttcaatttggttta |
206 |
Q |
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| T |
1772336 |
gtgtacgatgatttttacattataaataagtcaaacacacatgtttattttattacatacaaaagaggtaaaatatggcaggaattttcaatttggtttg |
1772435 |
T |
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| Q |
207 |
tgttatggtcctctttctttcactgttcaatgctataataaatgtcgatggtaagcacctttttaagcttcttattaacctta |
289 |
Q |
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| T |
1772436 |
tgctatggtcctctttctttcattgtttattgttctaacaaacgtccatggtaaacacctttttaaatttcttattaacctta |
1772518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 1769684 - 1769969
Alignment:
| Q |
1 |
gcatgtcatattgaaatatttatcggatatgttatgataattttaattttacatatgatatcttgtaacaagtgacatttctttnnnnnnnnnnnnnnng |
100 |
Q |
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| T |
1769684 |
gcatggcatattgaaatatttacaggacatgttctgataattttaattttacatatggtttcgtgtaacaagtgacaattctttaaaaagaaaaaa---g |
1769780 |
T |
|
| Q |
101 |
taagcaatgtacgatggtttttacattataaattagttaaacacacattttgtttctattacatacaaaagaggaaaaatatggccggaattttcaattt |
200 |
Q |
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| T |
1769781 |
taagcagtgtacaataatttttacattataaattggtcaaacacacatttttattctattacatacaaaaaaggtaaaatatggctagaattttcaattt |
1769880 |
T |
|
| Q |
201 |
ggtttatgttatggtcctctttctttcactgttcaatgctataataaatgtcgatggtaagcacctttttaagcttcttattaacctta |
289 |
Q |
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| T |
1769881 |
gatttatgttatggtcctctttctttcattgtttattattctaacaaacggcgatggtaagcactttttgaaatttcatattaacctta |
1769969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 1758979 - 1759086
Alignment:
| Q |
118 |
tttttacattataaattagttaaacacacattttgtttctattacatacaaaagaggaaaaatatggccggaattttcaatttggtttatgttatggtcc |
217 |
Q |
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|||| ||||||||||||||| ||| | |||||||| ||||||| ||||| || | |||||||||| ||| ||| || || ||||||||||||||| |
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| T |
1758979 |
ttttaacattataaattagtcctacaaagattttgttattattacaaacaaacgatggaaaatatggctagaaatttaaagtttatttatgttatggtcc |
1759078 |
T |
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| Q |
218 |
tctttctt |
225 |
Q |
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|||||||| |
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| T |
1759079 |
tctttctt |
1759086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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