View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_53 (Length: 357)
Name: NF16592_low_53
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 8457313 - 8457635
Alignment:
| Q |
20 |
ggatgaacgtgctgtaacatcatctactggtggactggtaacatatatgatacattcaaatatattttcattttattcgaatttgaatcccatgttcctc |
119 |
Q |
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| T |
8457313 |
ggatgaacgtgctgtaacatcatctactggtggactggtaacatatatgatacatccaaatatattttcattttattcgaatttgaatcccatgttcctc |
8457412 |
T |
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| Q |
120 |
ctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaa |
219 |
Q |
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| T |
8457413 |
ctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaa |
8457512 |
T |
|
| Q |
220 |
ggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacactacaccttt |
319 |
Q |
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| T |
8457513 |
ggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacactacaccttt |
8457612 |
T |
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| Q |
320 |
agaatattgagggttttcctttg |
342 |
Q |
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| T |
8457613 |
agaatattgagggttttcctttg |
8457635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 112 - 310
Target Start/End: Complemental strand, 6827925 - 6827728
Alignment:
| Q |
112 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
211 |
Q |
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| T |
6827925 |
tgttcctcttgctgtatctttgcgttgttcatttctggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
6827826 |
T |
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| Q |
212 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
310 |
Q |
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| T |
6827825 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
6827728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 112 - 310
Target Start/End: Complemental strand, 27964568 - 27964371
Alignment:
| Q |
112 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
211 |
Q |
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|||||||| || | |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
27964568 |
tgttcctcttgctatatctttgcgttgttcatttcaggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
27964469 |
T |
|
| Q |
212 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
310 |
Q |
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| T |
27964468 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
27964371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 151 - 310
Target Start/End: Original strand, 9822258 - 9822416
Alignment:
| Q |
151 |
taatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgc |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9822258 |
taatcgaaacactggggccattttccacgggtttccccatatcgaccacactcaagattttgtgagaaaggatatcataggatggcttcagtggctttgc |
9822357 |
T |
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| Q |
251 |
cataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9822358 |
cataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
9822416 |
T |
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