View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_55 (Length: 353)
Name: NF16592_low_55
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 18497988 - 18497657
Alignment:
| Q |
17 |
attatagatacaatgccctttcatgttgtgttaaggcttaacactttgtttaattatgaacaaactaattctattatgcaccctttcaaatgcacaatgt |
116 |
Q |
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| T |
18497988 |
attatagatacaatgccctttcatgttgtgttaaggcttaacactttgtttaattatgaacaaactaattctattatgcaccctttcaaatgcacaatgt |
18497889 |
T |
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| Q |
117 |
gactataatgactaattaaaatgtttaatttgtttggtcattttctttgtcgcctatcttaaagcaagaaaaggatggcacatcacagactctttctccc |
216 |
Q |
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| T |
18497888 |
gactatagtgactaattaaaatgtttaatttgtttggtcattttctttgtcacctatcttaaagcaagaaaaggatggcacatcacagactctttctccc |
18497789 |
T |
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| Q |
217 |
ttgtttcaggcaaagctaaatttaaggaacagcattttctgt--nnnnnnnnnnnnntctttctttttattgcacaagagctaataatttatagaaggaa |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18497788 |
ttatttcaggcaaagctaaatttaaggaacagcattttctgtcccccgtcccccccctctttctttttattgcacaagagctaataatttatagaaggaa |
18497689 |
T |
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| Q |
315 |
tcaaatttgttaaataagtgatgttcttttca |
346 |
Q |
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|||||||||| ||||||||||||||| ||||| |
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| T |
18497688 |
tcaaatttgtcaaataagtgatgttcatttca |
18497657 |
T |
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