View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_57 (Length: 344)
Name: NF16592_low_57
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 6177127 - 6176811
Alignment:
| Q |
13 |
gagaatagggtggttgtgttgtaaaaagtaaaaattagtgtaagggtgggacctaaagtgcagtaaataaaagagatacaaacctgtacttggagctgaa |
112 |
Q |
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| T |
6177127 |
gagaatagggtggttgtgttgtaaaaagtaaaaattagtgtaagggtgggacctaaagtgcagtaaataaaagagatacaaacctgtacttggagctgaa |
6177028 |
T |
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| Q |
113 |
gctgtttaaggtattcaatagcttcatctagcattgaagctttatcagtctgtcacacacatggaaacaatccactacattaagaatactaattctaatt |
212 |
Q |
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| T |
6177027 |
gctgtttaaggtattcaatagcttcatctagcattgaagctttatcagtctgtcacacacatggaaacaatccactacgttaagaataataattctaatt |
6176928 |
T |
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| Q |
213 |
nnnnnnnnnnnnnnntcacaccctttaaactaaggtctaaaaatgttatgcaccttgttagaatttggaattagattttgtaaagctttcattttctcat |
312 |
Q |
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| T |
6176927 |
aaaaaaaataaaaaatcacaccctttaaactaaggtctaaaaatgttatgcaccttgttagaatttggaattagattttgtaaagctttcattttctcat |
6176828 |
T |
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| Q |
313 |
tgatcctactccttctt |
329 |
Q |
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| T |
6176827 |
tgatcctactccttctt |
6176811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 5756262 - 5756200
Alignment:
| Q |
263 |
caccttgttagaatttggaattagattttgtaaagctttcattttctcattgatcctactcct |
325 |
Q |
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| T |
5756262 |
caccttgttagaatttggaattaaattttgtaaggctttcaatttctcattaatcttactcct |
5756200 |
T |
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