View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_58 (Length: 340)
Name: NF16592_low_58
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_58 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 41023788 - 41023463
Alignment:
| Q |
1 |
aggttatagttgtaagagtgtacgtgtggagaatgatcgggtagcagatttggaaaatgaagtaacaaaaatgattgttaatcagagatttttcaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41023788 |
aggttatagttgtaagagtgtacgtgtggagaatgatcgggtagcagatttggaaaatgaagtaacaaaaatgattgttaatcagagatttttcaacaaa |
41023689 |
T |
|
| Q |
101 |
aactctaaaggaaaagatggtgcagattgtcagcctaatcaatttttggatgctgtacaggttttatattcgaacaaggaacttttcaccaaacttctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41023688 |
aactctaaaggaaaagatggtgcagattgtcagcctaatcaatttttggatgctgtacaggttttatattcgaacaaggaacttttcaccaaacttctgc |
41023589 |
T |
|
| Q |
201 |
aggatcctaactctctgttggtaaaacagattcatgacatacagaaaactcaagtgaaagcagaagaaaatggagtaaaaagattgaataaagctcaaaa |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41023588 |
aagatcctaactctctgttggtaaaacagattcatgacatacagaaaactcaagtgaaagcagaagaaaatggagtaacaagattgaataaagctcaaaa |
41023489 |
T |
|
| Q |
301 |
cagtagtagttttgataggtttaatt |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41023488 |
cagtagtagttttgataggtttaatt |
41023463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University