View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_60 (Length: 335)
Name: NF16592_low_60
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_60 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 28813465 - 28813156
Alignment:
| Q |
18 |
taatttaggtaacacgttttaattttttacagatactacattaactataagtttatgaaaaagaaagtcaagagatatgcagaacaaattgaggttggag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28813465 |
taatttaggtaacacgttttaattttttacagatactacattaactataagtttatgaaaaagaaagtcaagagatatgtagaacaaattgaggttggag |
28813366 |
T |
|
| Q |
118 |
ctcaaaatcaccataatgtactccgagatttttcactgctgctagacaatcaggtcaatacgcttaacgaaatgtttagattggcggtacattttgatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28813365 |
ctcaaaatcaccataatgtactccgagatttttcactgctgctagacaatcaggtcaatacgcttaacgaaatgtttagattggcggtacattttgatat |
28813266 |
T |
|
| Q |
218 |
tacaataaactttaagacttctttgcttgctcttgattttcagatagaaaaaattgttttatttctacttgaacaacaaggtgtacttgcgcgaaggctg |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28813265 |
tacaataaattttaagacttctttgcttgctcttgattttcagatagaaaaaattgttttatttctacttgaacaacaaggtgtacttgcgcgaaggctg |
28813166 |
T |
|
| Q |
318 |
tcgcatattg |
327 |
Q |
| |
|
|||||||||| |
|
|
| T |
28813165 |
tcgcatattg |
28813156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 33419451 - 33419539
Alignment:
| Q |
238 |
ctttgcttgctcttgattttcagatagaaaaaattgttttatttctacttgaacaacaaggtgtacttgcgcgaaggctgtcgcatattg |
327 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||| || | ||||| |||||| | |||||||| |||||||||||||||| |
|
|
| T |
33419451 |
ctttgcttgctcttgagtttcagatag-aaaaattgttttacttttgcttgagcaacaaagagtacttgcttagaggctgtcgcatattg |
33419539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University