View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_61 (Length: 333)
Name: NF16592_low_61
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 66 - 317
Target Start/End: Complemental strand, 24161833 - 24161582
Alignment:
| Q |
66 |
ggctaaagaagatggaaggactgaagaggatcaacgtccatactttcatacaacattatgttggaaatgggtgggagtccaattgnnnnnnnggacacaa |
165 |
Q |
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| T |
24161833 |
ggctaaagaagatggaaggactgaagaggatcaacgtccatactttcatacaacattatgttggaaattggtgggagtccaattgtttttttggacacaa |
24161734 |
T |
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| Q |
166 |
cttataatgattcggatcctcttccacgctacaacagtgtactaatttatattttaactctaccgcatgcgaccacactttttggcacaannnnnnnngt |
265 |
Q |
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| T |
24161733 |
cttaaaatgattcggatcctcttccacgctacaacgatgtactaatttatattttaactctaccgcatgcgaacacacttttttgcacaattttttttgt |
24161634 |
T |
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| Q |
266 |
tgcactgtggaagaggacccaaatcatactcaagaaagttacaagtcaaatt |
317 |
Q |
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| T |
24161633 |
tgcactgtggaagaggacccaaatcatactcaagaaagttacaagtcaaatt |
24161582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 24161923 - 24161866
Alignment:
| Q |
8 |
catcatcaacttttatcgatttggttcctccgtagtccctccaacttcatcaacaaaa |
65 |
Q |
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| T |
24161923 |
catcatcaacttttatcgatttggttcctccgtagtccctccaacttcatcaacaaaa |
24161866 |
T |
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