View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_low_63 (Length: 326)

Name: NF16592_low_63

Description: NF16592

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16592_low_63

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 181; Significance: 9e-98; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 181; E-Value: 9e-98

Query Start/End: Original strand, 18 - 236

Target Start/End: Original strand, 41342639 - 41342858

Alignment:

Q	18	ttaaatatataatgttgactctagccggtcaaagaattttcattagtcggtgaagcctaaaacaaattttaaaacattagatttttt-gttggtgggctt	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	41342639	ttaaatatataatgttgactctagccggtcaaagaattttcattagtcggtgaagcctaaaacaaattttaaaacatgagatttttttgttggtgggctt	41342738	T

Q	117	tcaagttagagttttagtaatcttacctt-gtgatggtcatgtgttgatcacaacttagcaattggacaataattgtgatgatgaaagcaaataacattc	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41342739	-caagttagagttttagtagtcttatctttgtgatggtcatgtgttgatcacaacttagcaattggacaatgattgtgatgatgaaagcaaataacattc	41342837	T

Q	216	attcctcccatgaaagagtat	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41342838	attcctcccatgaaagagtat	41342858	T

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Target: chr5; HSP #2

Raw Score: 84; E-Value: 7e-40

Query Start/End: Original strand, 232 - 319

Target Start/End: Original strand, 41342877 - 41342964

Alignment:

Q	232	agtattttgaatatttacaaataagtttactatatgccacaaacaaagatgtataatgctctacaatacattaactggagaataatct	319	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	41342877	agtattttgaatatttacaaataagtttactatatgccacaaacaaagatgtataatgctctacaatacattaactggagaagaatct	41342964	T

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