View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_64 (Length: 321)
Name: NF16592_low_64
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_64 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 5396425 - 5396728
Alignment:
| Q |
18 |
agctttatccttacatattcattatcaaacatgggtgatattagcaatggaaatcttgatgtggttatgaatgtaaacgatgatgctaccaaaaaatgtg |
117 |
Q |
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| T |
5396425 |
agctttatccttacatattcattattaaacatgggtgatattagcaatggaaatcttgatgtggttatgaatataaacgatgatgctaccaaaaaatgtg |
5396524 |
T |
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| Q |
118 |
acgacacaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccnnnnnnnttaattgttgtttatggttaattaattagatgt |
217 |
Q |
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| T |
5396525 |
acgacacaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccaaaaaaattaattgttgtttatggttaattaattagatgt |
5396624 |
T |
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| Q |
218 |
tctcactnnnnnnnncggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtggttctg |
317 |
Q |
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| T |
5396625 |
tctcactaaaaaaaatggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctg |
5396724 |
T |
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| Q |
318 |
tggt |
321 |
Q |
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|||| |
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| T |
5396725 |
tggt |
5396728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 5408358 - 5408050
Alignment:
| Q |
18 |
agctttatccttacatattcattatcaaacatgggtgatatt------agcaatggaaatcttgatgtggttatgaatgtaaacgatgatgctaccaaaa |
111 |
Q |
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| T |
5408358 |
agctttatcttcacatattcattattaaacatgggtgatttttcatctagcaatggaagtcttgatgtggttatgaatgtaaacgatggcgcaaacaaaa |
5408259 |
T |
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| Q |
112 |
aatgtgacgacacaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccnnnnnnnttaattgttgtttatggttaattaatt |
211 |
Q |
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| T |
5408258 |
aatgtgatgccacaaccattgatgatcatgttccttttttgcaaaaggtgactttatttatcctttcaaaaaattaattgttgtttatggttaattaatt |
5408159 |
T |
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| Q |
212 |
agatgttctcactnnnnnnnncggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtg |
311 |
Q |
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|||| |||| ||| |||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5408158 |
agatcttctgactaaaaacat-ggatgtgttgcgttgattgttgagtatagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtg |
5408060 |
T |
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| Q |
312 |
gttctgtggt |
321 |
Q |
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|||||||||| |
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| T |
5408059 |
gttctgtggt |
5408050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 5388549 - 5388601
Alignment:
| Q |
251 |
tgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgc |
303 |
Q |
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| T |
5388549 |
tgttgaatgtagttggtagcagaggtggtagggacgtacttcttgatatttgc |
5388601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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