View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_69 (Length: 299)
Name: NF16592_low_69
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_69 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 48187370 - 48187501
Alignment:
| Q |
8 |
agataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48187370 |
agataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgt |
48187469 |
T |
|
| Q |
108 |
acggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
48187470 |
atggaagcgcgtggagtgatgcccttaccttt |
48187501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 21268211 - 21268348
Alignment:
| Q |
3 |
caccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacata |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
21268211 |
caccaagataattatcacatcaccaatatatagcacatagcactcatttcaaaacaacaacactataataatcatcacaacacaaatatatacacacata |
21268310 |
T |
|
| Q |
103 |
cacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21268311 |
cacgtacggaagcgcgtgaagtgatgcccttacctttg |
21268348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 16421719 - 16421583
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
16421719 |
ccaccaagataattatcacatcaccaatatataacacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaa--atagtcacacat |
16421622 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
16421621 |
acacgtacggacgtgcgtggagtgatgcccttacctttg |
16421583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 179 - 297
Target Start/End: Original strand, 48187536 - 48187654
Alignment:
| Q |
179 |
ctttgttccactatctttatacattcacagttaaatacttaataacttagtttcatacttgaggtactcctgatccgtactaagggccttggtttggttt |
278 |
Q |
| |
|
|||||||| |||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48187536 |
ctttgttctactacctctataccttcacaattaaatacttaataacttagtttcatacttgaggtactcctgatccgtactaagggctttggtttggttt |
48187635 |
T |
|
| Q |
279 |
aaggtaactaactcctgcc |
297 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
48187636 |
aaggtaactaactcttgcc |
48187654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 36018016 - 36017877
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||||| |||||||||||| || ||||||||| |||||||||||| ||||| |||| | |
|
|
| T |
36018016 |
ccaccaagataattatcacaacaccaatatataacacataatcattcatttcaaaacaacaccaatatgataattatcacaacacaattatatacacata |
36017917 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36017916 |
tacacgtacggaagcacgtggagtgatgcccttacctttg |
36017877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 11283385 - 11283522
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||||| ||| |||||||| || ||||||||| |||||||||||| |||| |||| | |
|
|
| T |
11283385 |
ccaccaagataattatcacaacaccaatatataacacataatcattcatttctaaacaacatcattatgataattatcacaacacaattatacacacata |
11283484 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11283485 |
tacacgtacggaagcgcgtggagtgatgcccttacctt |
11283522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 12528719 - 12528858
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
|||||||||||||||||||| || || |||||| |||||| |||||| |||||||||||| || ||||| ||| |||| ||||||| ||||| |||| | |
|
|
| T |
12528719 |
ccaccaagataattatcacaacatcattatataacacataatcattcatttcaaaacaacaccattatgacaattatcataacacaattatatacacata |
12528818 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12528819 |
tacacgtacggaagcgcgtggagtgatgcccttacctttg |
12528858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 16484042 - 16483973
Alignment:
| Q |
69 |
gataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16484042 |
gataattatcacaacacaaatatatacacatatacacgtacggaagcgcgtggagtgatgcccttacctt |
16483973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 28384140 - 28384009
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
|||||||| |||||| |||| ||| |||||||| |||||| |||||| ||||||||||||||| ||||||||| |||| |||||| |||||| |||| |
|
|
| T |
28384140 |
ccaccaag-taattaccacaccacgaatatataacacataacattcatttcaaaacaacaacattatgataattatcaaaacacagatatat----acat |
28384046 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
|||||||| ||| |||||||||||| | |||||||| |
|
|
| T |
28384045 |
acacgtaccgaaatgcgtggagtgatactcttacctt |
28384009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 28393015 - 28392884
Alignment:
| Q |
3 |
caccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacata |
102 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||| |||||| |||||| ||||||||||||||| ||| ||||| |||| || |||||||||| ||||| |
|
|
| T |
28393015 |
caccaagagaattaccacaccaccaatatataacacataacattcatttcaaaacaacaacattataataattatcaaaaaacaaatatat----acata |
28392920 |
T |
|
| Q |
103 |
cacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
||| || ||| ||||||||||||||| ||| |||| |
|
|
| T |
28392919 |
cacacaccgaaacgcgtggagtgatgctcttgcctt |
28392884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 44668950 - 44668815
Alignment:
| Q |
3 |
caccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacata |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44668950 |
caccaagataattatcacatcaccaatatatagcacataacattcacttcaaa-caacaacactatgataatcatcacaacacaaatatattcacacata |
44668852 |
T |
|
| Q |
103 |
cacgtacggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44668851 |
cacgtacggaagcgcgtagagtgatgcccttaccttt |
44668815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 5537089 - 5537228
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||||| |||||| |||||||||||| || ||||||||| ||||| |||||| ||||| |||| | |
|
|
| T |
5537089 |
ccaccaagataattatcacaacaccactatataacacataatcattcatttcaaaacaacaccattatgataattatcactacacaattatatacacata |
5537188 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5537189 |
tacacgtacggaagcgcgtggagtgatgctgttacctttg |
5537228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 6818622 - 6818492
Alignment:
| Q |
10 |
ataattatcacatcaccaatatatagcacatagcattcacttcaaaa-caacaacactatgataatcatcacaacacaaatatattcacacatacacgta |
108 |
Q |
| |
|
|||||||||||| || ||| ||||| || ||| |||||| ||||||| ||||| |||||||||||| ||||||| |||||||||| || | ||||||||| |
|
|
| T |
6818622 |
ataattatcacaacaacaacatataacagataacattcatttcaaaaacaacaccactatgataattatcacaatacaaatatatacaaatatacacgta |
6818523 |
T |
|
| Q |
109 |
cggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
6818522 |
cataagcgcgtggagtgatgcccttaccttt |
6818492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 3897298 - 3897438
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaa--atatattcaca |
98 |
Q |
| |
|
||||||| |||||||||||| ||| ||||| || ||||||| |||||| |||||||||||| ||| | ||||| |||||||||||| |||||| ||| |
|
|
| T |
3897298 |
ccaccaaaataattatcacaacacaaatatgtaacacatagtcattcatttcaaaacaacaccaccaaaataattatcacaacacaattatatatataca |
3897397 |
T |
|
| Q |
99 |
catacacgtacggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
3897398 |
tatacacgtacggaaacacgtggagtgatacccttaccttt |
3897438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 15418989 - 15418853
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15418989 |
ccaccaagataattatcacatcaccaatatataaaacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
15418890 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15418889 |
atacgtacggaagcgtgtggagtgatgcccttacctt |
15418853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 15426006 - 15425870
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15426006 |
ccaccaagctaattatcacatcaccaatatatagaacatagcattcacttcaaaacaacaatactatgataatcatcacaacacaaatatattcacacat |
15425907 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15425906 |
atacgtacggaagcgtgtggagtgatgcccttacctt |
15425870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 28654434 - 28654572
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||| || ||||||||| ||||||||| || ||||| |||| | |
|
|
| T |
28654434 |
ccaccaagataattatcacaacaccaatatataacacataatcattcatttcaaaacaaccccattatgataattatcacaacagaattatatacacata |
28654533 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28654534 |
tacacgtacggaaacgcgtggagtgatgcccttaccttt |
28654572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 52944906 - 52944820
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatat |
93 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| |||||||||||| |||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
52944906 |
ccaccaaggtaattatcacaacaccaattaataatacatagcattcatttcaaaacaacacca-----ataattatcacaacacaaatatat |
52944820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 52944768 - 52944725
Alignment:
| Q |
95 |
cacacatacacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
52944768 |
cacatatacatgtacggaagcgtgtggagtgatgcccttacctt |
52944725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 1311543 - 1311405
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1311543 |
ccaccaagataattatcacatcaccaatatataacacatagtattcacttcaaaacaacaacactataataatcatcacaacacaaatatattcacacat |
1311444 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
1311443 |
acacgtacggaagcgcgtggagtgatactcttacatttg |
1311405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 19932803 - 19932666
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | || |
|
|
| T |
19932803 |
ccaccaagataactatcacatcagcaatatatagcacatagcattcacttcaaaacaacaacactataataatcatcacgacacaaatatattcataaat |
19932704 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19932703 |
acacgtacggaagcgcgtggagtgatgcccttaccttt |
19932666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 11034921 - 11035057
Alignment:
| Q |
3 |
caccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |||||| |||||||||||| || ||||||||| |||||||||||| ||||| |||| || |
|
|
| T |
11034921 |
caccaagataattatcacaacaccaatatataacacataatcattcatttcaaaacaacatcattatgataattatcacaacacaattatatacacatat |
11035020 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
11035021 |
acatgtacggaaacgcgtgaagtgatgcccttacctt |
11035057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 3224805 - 3224669
Alignment:
| Q |
3 |
caccaagataattatcacatcaccaatatata--gcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||| |||||| |||||| ||||| || |||| |||| |||||||||||||||||| || | |
|
|
| T |
3224805 |
caccaagataattatcacaacaccaatatatatagcacataacattcatttcaaa-caacagcaatatgctaattatcacaacacaaatatataatcata |
3224707 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
3224706 |
tacatgtacggaaacgcgtggagtgatgcccttacctt |
3224669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 18902033 - 18901896
Alignment:
| Q |
3 |
caccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacata |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
18902033 |
caccaagataactatcacatcaccaatatatagcacatatcattcacttcaaaacaacaacactataataatcatcacaacacaaatatattcacaaata |
18901934 |
T |
|
| Q |
103 |
cacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
18901933 |
cacgtacggaagcgcgtggaatgatacccttacctttg |
18901896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 18153465 - 18153328
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||||| |||||||||||| || ||||||||| ||||| |||||| ||||| |||| | |
|
|
| T |
18153465 |
ccaccaagataattatcacaacaccaatatataacacataatcattcatttcaaaacaacaccattatgataattatcaccacacaattatatacacata |
18153366 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153365 |
tacacgtacggaagcgcgtggagtgatgcccttacctt |
18153328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 51783494 - 51783595
Alignment:
| Q |
39 |
atagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| | |||| ||||||||||||||||| |||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
51783494 |
atagcatttacttcaaaacaacaacactataataatcattataacataaatatattcacacatatacgtacagaagcacgtggagtgatgcctttacctt |
51783593 |
T |
|
| Q |
139 |
tg |
140 |
Q |
| |
|
|| |
|
|
| T |
51783594 |
tg |
51783595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 24540712 - 24540576
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24540712 |
ccaccaagataattatcacatcaccaatatataaaacatagcattcacttcaaaacaacaacaatatgataatcatcacaacacaaatatattcacacat |
24540613 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
24540612 |
aaacgtacggaagcgtgtggagtgatacccttacctt |
24540576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 3509903 - 3509768
Alignment:
| Q |
3 |
caccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacata |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
3509903 |
caccaaggtaattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatggtaaccatcacaacacaa--atattcacacata |
3509806 |
T |
|
| Q |
103 |
cacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
3509805 |
cacatacggaagcgcatggaatgatgcccttacctttg |
3509768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 15277951 - 15277846
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||| ||| ||||||||| | |||| |||| |||| ||||||||||||| ||||||| |
|
|
| T |
15277951 |
ccaccaagataattatcataccaccaatatataacacatagcattcatttccaaacaacaatattatgttaattatcaaaacacaaatatatacacacat |
15277852 |
T |
|
| Q |
102 |
acacgt |
107 |
Q |
| |
|
|||||| |
|
|
| T |
15277851 |
acacgt |
15277846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 10431 - 10295
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacacat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
10431 |
ccaccaagataattatcacatcaccaatatataacacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaa--atagtcacacat |
10334 |
T |
|
| Q |
102 |
acacgtacggaagcgcgtggagtgatgcccttacctttg |
140 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
10333 |
acacgtacggacgtgcgtggagtgatgcccttacctttg |
10295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 7623 - 7491
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatagcattcacttcaaaacaacaacactatgataatcatcacaacacaaat--atattcacac |
99 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||| |||||| | || ||||| |||||||| |||||||| |||||||||||||| |||| | || |
|
|
| T |
7623 |
ccaccaagataattattacaacaccaatacataacacataac---catttcaa---aacaacaccatgataattatcacaacacaaatagatatataaac |
7530 |
T |
|
| Q |
100 |
atacacgtacggaagcgcgtggagtgatgcccttacctt |
138 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7529 |
atacatgtacggaagcgcgtggagtgatgcccttacctt |
7491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 34647 - 34785
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
||||||| |||||||||||| ||| |||||| | |||||| | |||| ||||||| | || ||| | ||||| ||||||||||| ||||| ||| | |
|
|
| T |
34647 |
ccaccaaaataattatcacaacacaaatataaaacacataatccttcatttcaaaatagcaccaccaaaataattatcacaacacagttatatatacata |
34746 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34747 |
tacacgtacggaaacgcgtggagtgatgcccttaccttt |
34785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 32870275 - 32870353
Alignment:
| Q |
61 |
aacactatgataatcatcacaacacaaatatattcacacatacacgtacggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||||| || ||||||||||| |
|
|
| T |
32870275 |
aacactatgataatcatcacaacataaatatatacacatatatacgtacggaagcacgtggagcgaaacccttaccttt |
32870353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 2039075 - 2038937
Alignment:
| Q |
2 |
ccaccaagataattatcacatcaccaatatatagcacatag-cattcacttcaaaacaacaacactatgataatcatcacaacacaaatatattcacaca |
100 |
Q |
| |
|
||||||| |||||||||| | ||| |||||| | |||||| | |||| |||||||| || ||| | ||||| ||||||||||| ||||| ||| | |
|
|
| T |
2039075 |
ccaccaaaataattatcataacacaaatataaaacacataatccttcatttcaaaacggcaccaccaaaataattatcacaacacagttatatatacata |
2038976 |
T |
|
| Q |
101 |
tacacgtacggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
|||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
2038975 |
tacatgtacggaagcacgtggagtgatgtccttaccttt |
2038937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 29963185 - 29963229
Alignment:
| Q |
95 |
cacacatacacgtacggaagcgcgtggagtgatgcccttaccttt |
139 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29963185 |
cacacacacacgtacggaagcgcgtggagtgatatccttaccttt |
29963229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University