View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_70 (Length: 299)
Name: NF16592_low_70
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_70 |
 | |
|
| [»] chr1 (10 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 1857310 - 1857599
Alignment:
| Q |
10 |
agaagaagtcttgctatgcattttctatcttgtttgaaaaacaataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857310 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
1857409 |
T |
|
| Q |
110 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857410 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
1857509 |
T |
|
| Q |
210 |
aatgaataagcactcttggatcaatgatgactcaaatgtagaggagagtcggtacttgcttcatgaatcatcatctagcctttatgaacc |
299 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1857510 |
aatgaataagcactcttggatcaaagatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcatttatgaacc |
1857599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 6 - 299
Target Start/End: Original strand, 1843295 - 1843588
Alignment:
| Q |
6 |
agagagaagaagtcttgctatgcattttctatcttgtttgaaaaacaataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
105 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843295 |
agagagaagaagtcttgcaatgaatttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
1843394 |
T |
|
| Q |
106 |
gagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843395 |
gagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
1843494 |
T |
|
| Q |
206 |
ggttaatgaataagcactcttggatcaatgatgactcaaatgtagaggagagtcggtacttgcttcatgaatcatcatctagcctttatgaacc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1843495 |
ggttaatgaataagcactcttggatcaaagatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcatttatgaacc |
1843588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 1868908 - 1869197
Alignment:
| Q |
10 |
agaagaagtcttgctatgcattttctatcttgtttgaaaaacaataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
109 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868908 |
agaagaagtcttgcaatgcatttactatcttgattgaaaaaagataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
1869007 |
T |
|
| Q |
110 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869008 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
1869107 |
T |
|
| Q |
210 |
aatgaataagcactcttggatcaatgatgactcaaatgtagaggagagtcggtacttgcttcatgaatcatcatctagcctttatgaacc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1869108 |
aatgaataagcactcttggatcaatgatgactcaaatgtagaggagagtcggttcttgcttcatgaatcatcatctagcttttatgaacc |
1869197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 1815738 - 1815446
Alignment:
| Q |
6 |
agagagaagaagtcttgctatgcattttctatcttgtttgaaaaacaataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
105 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1815738 |
agagagaagaagtcttgctacgcactttttatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
1815639 |
T |
|
| Q |
106 |
gagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
205 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1815638 |
gtgatcatggaggtggctgttcttgcggcgaactgtttgagacttataggggaggaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
1815539 |
T |
|
| Q |
206 |
ggttaatgaataagcactcttggatcaatgatgactcaaatgtagaggagagt-cggtacttgcttcatgaatcatcatctagcctttatgaa |
297 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1815538 |
ggttaatggataagcactcttggatcaatgcagaccttaatgtagaggagagtccactacttgcttcatgaatcatcatctagcatttatgaa |
1815446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 9161550 - 9161353
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgtttgaaaaacaataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaagg |
115 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||| | ||| | ||||||| |||||||| |||| | | ||||| |||||||| | ||||| |||| |
|
|
| T |
9161550 |
agtcttgctatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtattttaaatgatgaaaacaaggaggagattaagg |
9161451 |
T |
|
| Q |
116 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
213 |
Q |
| |
|
|||| ||| ||||||| || | |||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || ||||||||| |
|
|
| T |
9161450 |
aggttgctattcttgcagcaaggtgtttgagactaagaggggatgaaaggcctagcatgaaggaagtggcaatggagttggatggtataaggttaatg |
9161353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 9170376 - 9170179
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgtttgaaaaacaataatgtgtttgaagttattcaagatgg-tttgtggaatgaagaaaacaaacaagagatcaag |
114 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||| | |||| | ||||||| |||||||| ||| |||||| || || || ||||| ||||||| ||| |
|
|
| T |
9170376 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaattttttgaagctattcaagttggatttgtg-aacgatgataacaagaaagagattaag |
9170278 |
T |
|
| Q |
115 |
gaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
213 |
Q |
| |
|
||||| ||| ||||||| | | |||||| |||||||||||||| |||||||| | |||||||||||||| ||||| ||||| || || ||||||||| |
|
|
| T |
9170277 |
gaggttgctattcttgcttcaaggtgtttaagacttagaggggatgaaagaccttgtatgaaggaagtggcaatggagttggatggcataaggttaatg |
9170179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 9199943 - 9199746
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgtttgaaaaacaataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaagg |
115 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||| | |||| | ||||| | |||||||| ||| | | | |||| |||||||| ||||||| |||| |
|
|
| T |
9199943 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttggatgatgaaaacaagaaagagattaagg |
9199844 |
T |
|
| Q |
116 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
213 |
Q |
| |
|
|||| ||| ||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| || || ||||||||| |
|
|
| T |
9199843 |
aggttgctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggtataaggttaatg |
9199746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 9118902 - 9119097
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgtttgaaaaacaataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaagg |
115 |
Q |
| |
|
|||||||||||||| || | |||||||| ||| | |||| | ||||||| |||||||| ||| | | |||||| || ||||| ||||||| |||| |
|
|
| T |
9118902 |
agtcttgctatgcacttcttgtcttgtttaaaacaagataaactttttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaagg |
9119001 |
T |
|
| Q |
116 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaa |
211 |
Q |
| |
|
|||| ||| ||||||| || | ||||||||||||| |||| || |||||||| || ||||||||| | |||||||| ||||| || || ||||||| |
|
|
| T |
9119002 |
aggttgctattcttgcagcaaggtgtttgagacttcgaggagaggaaagacctagtatgaaggaaatagctatggagttggatggtataaggttaa |
9119097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 9229325 - 9229131
Alignment:
| Q |
35 |
tatcttgtttgaaaaacaataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaaggaggtggctgttcttgcggc |
134 |
Q |
| |
|
|||||||||| | | | ||| |||||| ||||||| |||||| |||| | | |||||| || ||||| | ||||| ||||| || ||| ||||||| || |
|
|
| T |
9229325 |
tatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctattcttgctgc |
9229226 |
T |
|
| Q |
135 |
gaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttgga |
229 |
Q |
| |
|
| ||| |||||||||| ||| || |||||||| |||||||| |||||||||||||| | ||||| | ||||||||| | |||||| |||||| |
|
|
| T |
9229225 |
aaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatggagctagaggggttaaggttaatggagaagcacccttgga |
9229131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 9218387 - 9218262
Alignment:
| Q |
88 |
aatgaagaaaacaaacaagagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggcta |
187 |
Q |
| |
|
||||| |||||||| ||||||| |||||||| || ||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||| |
|
|
| T |
9218387 |
aatgatgaaaacaagaaagagattaaggaggtttctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagcta |
9218288 |
T |
|
| Q |
188 |
tggaattggagggaatgaggttaatg |
213 |
Q |
| |
|
|||| ||||| || || ||||||||| |
|
|
| T |
9218287 |
tggagttggatggcataaggttaatg |
9218262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University