View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_74 (Length: 289)
Name: NF16592_low_74
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 41 - 274
Target Start/End: Complemental strand, 40577632 - 40577399
Alignment:
| Q |
41 |
ataaggatatacatttttcaggcatcaaactcataaaataatcgatactcattttcttttttcaggcaatattcaattttctgaaatgtaactttcttgc |
140 |
Q |
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| T |
40577632 |
ataaggataaacatttttcaggcatcaaactattaaaataatcgatactcattttcttttttcaggcaatattcagttttctgaaatgtaactttcttgc |
40577533 |
T |
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| Q |
141 |
acaatctaaaaatcacttttttctaaaataactaaacaaacataccctatattaaatatcgatcttcttaactgctcaatcaagattttcctcgaggtga |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40577532 |
acaatctaaaaatcacttttttctaaaataactaaacaaacataccctatattaaatatcgatcttcttaactgctcaatcaagattttcctcgaggtga |
40577433 |
T |
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| Q |
241 |
caatgtagactatgcttgttcaataagtgcaaat |
274 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40577432 |
caatgtagactatgcttgttcaataagtgcaaat |
40577399 |
T |
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