View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_8 (Length: 592)
Name: NF16592_low_8
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 33505758 - 33506177
Alignment:
| Q |
1 |
aagaacattctccgaacaaaattattgtcataatctatattataatcaattttattccatgaagttatgcaatgaaattgataaataaataaatggatgg |
100 |
Q |
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| T |
33505758 |
aagaacattctccgaacaaaattattgtcataatctatattataatcaattttattccatgaagttatgcaatgaaattgataaataaataaatggatgg |
33505857 |
T |
|
| Q |
101 |
ttccctgaaactttgccaatagattacgaagtttccttccgttatttgtttatcattattgtagtgcatagaacactagcaaaaatgatcccttcaaatc |
200 |
Q |
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| T |
33505858 |
ttccctgaaactttgtcaatagattacgaagtttccttccgttatttgtttatcattattgtagtgcatagaacactagcaaaaatgatcccttcaaatc |
33505957 |
T |
|
| Q |
201 |
tatagagtttagaggcgtacacacaaatataatttttctcttaaaatgttaaatcaaannnnnnnaactattnnnnnnngtattttattgtttgtgtggt |
300 |
Q |
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| T |
33505958 |
tatagtgtttagaggcgtacacacaaatataaattttctcttaaaatgttaaatcaaatttttttaactattaaaaaaagtattttattgtttgtgtggt |
33506057 |
T |
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| Q |
301 |
taaacattattgatttatcttgtgattatgtgagaa-----taactccataaaaaacacataacatttataatattgcaatattgctactttaatttact |
395 |
Q |
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| T |
33506058 |
taaacattattgatttatcttgtgattatgtgagaataacgtaactccataaaaaacacataacatttataatattgcaatattgctactttaatttact |
33506157 |
T |
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| Q |
396 |
atctttatatattttttaat |
415 |
Q |
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| T |
33506158 |
atctttatatattttttaat |
33506177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 407 - 574
Target Start/End: Original strand, 33506377 - 33506544
Alignment:
| Q |
407 |
ttttttaatttgtaccgtttttatagcactagctaggtcttggacaagtcatgtgaatcatgaatgtgttccattgcatatcaatcacaaactgaagtac |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33506377 |
ttttttaatttgtaccgtttttatagcactagctaggtcttggacaagtcatgtgaatcatgaatgtgttccattgcatatcaatcacaaactgaagtac |
33506476 |
T |
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| Q |
507 |
taggtttgattaacctctcaagaaaaaagtttaattaaccactgcatcattgccaatggcccaaaagt |
574 |
Q |
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| T |
33506477 |
taggtttgattaacctctccagaaaaaagtttaattaaccactgcatcattgccaatggcccaaaagt |
33506544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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