View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16592_low_86 (Length: 274)
Name: NF16592_low_86
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_86 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 17164379 - 17164133
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17164379 |
tcatctccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
17164280 |
T |
|
| Q |
110 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17164279 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttagatgagtatatactatagttaaatatttcat |
17164180 |
T |
|
| Q |
210 |
gatcatgatcatggtgatggttaagttggaggtagagaaataaccaa |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17164179 |
gatcatgatcatggtgatggttaagttggaggtagagaaataaccaa |
17164133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 17161335 - 17161094
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17161335 |
tcatctccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
17161236 |
T |
|
| Q |
110 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcat |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
17161235 |
atattggaaaattagaaccatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtgtaaactatagttaagtatttcat |
17161136 |
T |
|
| Q |
210 |
gatcatgatcatggtgatggttaagttggaggtagagaaataaccaaa |
257 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
17161135 |
gat------catggtgaaggttaagttgggggtagagaaatagccaaa |
17161094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 17157413 - 17157172
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
17157413 |
tcatctccttcttctattttgcagagacacacagcacattcaacatcttcatttgagccatgggtgtgttcataattgcatatatcatatatttctccaa |
17157314 |
T |
|
| Q |
110 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| || ||||| |
|
|
| T |
17157313 |
ttattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtgtaaactagagttaagtacttcat |
17157214 |
T |
|
| Q |
210 |
gatcatgatcatggtgatggttaagttggaggtagagaaataaccaaa |
257 |
Q |
| |
|
||| |||||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
17157213 |
gat------catggtaatggttaagttggatgtagagaaatagccaaa |
17157172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 26399390 - 26399596
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
109 |
Q |
| |
|
||||| |||||||||||||| || |||||||| | |||||| |||||||| | |||| || | || |||||||||||||||| |||||||||| ||| |
|
|
| T |
26399390 |
tcatctccttcttctattttacatagacacacagaacattctacatcttcctctgagtcagagatgggttcataattgcatatactatacatttcttcaa |
26399489 |
T |
|
| Q |
110 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcat |
209 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||||||||| | || |||||||||||||| | ||| ||||||| ||| || | ||| || |
|
|
| T |
26399490 |
ttattggaaaatgagaatcatggagcttatagaagggataatatgtaaggaaatttaatacccattttaggtaagtgtatactagagtgaagtgtttaat |
26399589 |
T |
|
| Q |
210 |
gatcatg |
216 |
Q |
| |
|
||||||| |
|
|
| T |
26399590 |
gatcatg |
26399596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 28148691 - 28148477
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataatt---gcatatgtcatacatttctc |
106 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||||| |||||||||| ||||| | ||||||| |||||| |||| | | |||||||||| |
|
|
| T |
28148691 |
tcatctccttcttctattttggagagacacacaacacattctacatcttcatctgagcaagatttgtgtttataattaatgcatgtattgtacatttctc |
28148592 |
T |
|
| Q |
107 |
caaatattggaaaattagaatcatgaagcttgt---agaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaata |
203 |
Q |
| |
|
||| ||||||||||| |||| ||| ||||| | |||||||||||||| |||| | ||||||||||||||||| |||||| || |||| |||| || |
|
|
| T |
28148591 |
caattattggaaaatgagaacgatggagcttattatagaagggataatatataaggaaatctaatacccattttagatgagtgtaaactaggcttaagta |
28148492 |
T |
|
| Q |
204 |
tttcatgatcatgat |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28148491 |
tttcatgatcatgat |
28148477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 28153346 - 28153134
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataatt---gcatatgtcatacatttctc |
106 |
Q |
| |
|
||||| ||||||||||||||| ||||||| || ||||||| |||||||||| ||||| | |||||| |||||| |||| | | |||||||||| |
|
|
| T |
28153346 |
tcatctccttcttctattttggagagacatacaacacattctacatcttcatctgagcaagatgtgtgtttataattaatgcatgtattgtacatttctc |
28153247 |
T |
|
| Q |
107 |
caaatattggaaaattagaatcatgaagcttgt---agaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaata |
203 |
Q |
| |
|
||| ||||||||||| ||||| ||| ||||| | |||||||||||||| |||| | |||||||| |||||||| |||||| ||||||| | |||| || |
|
|
| T |
28153246 |
caattattggaaaatgagaatgatggagcttattatagaagggataatatataaggaaatctaataaccattttagatgagtgtatactagacttaagta |
28153147 |
T |
|
| Q |
204 |
tttcatgatcatg |
216 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28153146 |
tttcatgatcatg |
28153134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 25217282 - 25217479
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||| |||| || ||||||||||| | |
|
|
| T |
25217282 |
tcatctccttcttctattttgcagagacacacaacacattccacatcttcattgg---------tgtgttcataattgtatatatcgtacatttctccta |
25217372 |
T |
|
| Q |
110 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcat |
209 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||| || ||||| |
|
|
| T |
25217373 |
ttattggaaaattagaatcatgaagtttatagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagttaagtagttcat |
25217472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 25225774 - 25225971
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||| |||| || ||||||||||| | |
|
|
| T |
25225774 |
tcatctccttcttctattttgcagagacacacaacacattccacatcttcattgg---------tgtgttcataattgtatatatcgtacatttctccta |
25225864 |
T |
|
| Q |
110 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcat |
209 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||| || ||||| |
|
|
| T |
25225865 |
ttattggaaaattagaatcatgaagtttatagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagttaagtagttcat |
25225964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 25229095 - 25229292
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||| |||| || ||||||||||| | |
|
|
| T |
25229095 |
tcatctccttcttctattttgcagagacacacaacacattccacatcttcattgg---------tgtgttcataattgtatatatcgtacatttctccta |
25229185 |
T |
|
| Q |
110 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcat |
209 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||| || ||||| |
|
|
| T |
25229186 |
ttattggaaaattagaatcatgaagtttatagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagttaagtagttcat |
25229285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 25233822 - 25234019
Alignment:
| Q |
10 |
tcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctccaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||||| |||| || ||||||||||| | |
|
|
| T |
25233822 |
tcatctccttcttctattttgcagagacacacaacacattccacatcttcattgg---------tgtgttcataattgtatatatcgtacatttctccta |
25233912 |
T |
|
| Q |
110 |
atattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcat |
209 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||| || ||||| |
|
|
| T |
25233913 |
ttattggaaaattagaatcatgaagtttatagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagttaagtagttcat |
25234012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 25231035 - 25231112
Alignment:
| Q |
139 |
tagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaatatttcatgatcatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||| || |||||||||||| |
|
|
| T |
25231035 |
tagaagggataatatgtaagaatatctaatacccattttagatgagtgtaaaatatagttaagtagttcatgatcatg |
25231112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 19317453 - 19317259
Alignment:
| Q |
9 |
atcatcaccttcttctattttgcagagacacactgcacattcaacatcttcatttgagccatggttgtgttcataattgcatatgtcatacatttctcca |
108 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||| ||||||| | |||| || || || ||||||||||||||| | ||||||||||||| |
|
|
| T |
19317453 |
atcatctccttcttctattttgcatagacacacaacacattctacatctttctctgagtcagggatggattcataattgcatatattatacatttctcca |
19317354 |
T |
|
| Q |
109 |
aatattggaaaattagaatcatgaagcttgtagaagggataatatgtaagaatatctaatacccattttatatgagtatatactatagttaaata |
203 |
Q |
| |
|
| ||||||||||| ||||||||| ||||| ||||| |||||||||||||||| ||||| | ||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
19317353 |
attattggaaaatgagaatcatggagcttatagaatggataatatgtaagaaaatctattgcccattttagatgagtgtatactagagttaaata |
19317259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University