View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_9 (Length: 592)
Name: NF16592_low_9
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Complemental strand, 12916046 - 12915468
Alignment:
| Q |
18 |
acatttggtctgaaaaagtgctccatgcacatccaatccatgagccatacaccggagttgacactacaaacggttttcattgactattattt-------- |
109 |
Q |
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| T |
12916046 |
acatctggtctgcaaaagtgctccatgcacatccaatccatgagccgtacaccggagttgacactacaaatggttttcattgactattatttgactatta |
12915947 |
T |
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| Q |
110 |
---cattaaaaactatgaaaattcaatttttgatgtgtgatgaacctgtcaaaagtgcaaggtattccatacccttccataatactgaaattctggaact |
206 |
Q |
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| T |
12915946 |
tttcattaaaaactatgaaaattcaaattttgatgtgtgacgaacctgtcaaaagtgcaaggtattccatacccttccataatactgaaattctggaact |
12915847 |
T |
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| Q |
207 |
ccatttctttgttgcgaaaggcagagctgtagttttcatcaagtacaatttgggagagcaaagttgcctgcnnnnnnnngtcagtgcacatggcttagca |
306 |
Q |
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| T |
12915846 |
ccatttctttgttgcgaaaggcagagctgtagttttcattaagtacaaattgggagagcaaagttgcctgcaaaaaaaagttagttcacatggcttagca |
12915747 |
T |
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| Q |
307 |
ttgttaacgattactgcattggtgtaacttaagagcagctgtattaattgctattaccaatttttcaattttttgcttcctaaattctccaacaatgatg |
406 |
Q |
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| T |
12915746 |
ttgttatcgattactgcattggtgtaacttaagagcaactgtattaattgctattaccaatttttcaattttttgcttcctaaattctccaacaatgatg |
12915647 |
T |
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| Q |
407 |
gggcaatttgagtcaagatggtagatggtcttttcttctatatgaatgatcattaggtaccaatgtcccatacttgttctgattggaacatatatctata |
506 |
Q |
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| T |
12915646 |
gggcaatttgagtcaagatggtagatggtcttttcttctatatgaatgatcattagataccaatgtcccatacttgttctgattggaacatatatctata |
12915547 |
T |
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| Q |
507 |
tgcacaacaacaatccattattgaagccaacatatttgttgtatcactttcaacatctcagaaaacatatttcatctca |
585 |
Q |
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| T |
12915546 |
tgcacaacaacaatccattattgaagccaacatatttgttatatcactttcaacatctcagaaaacatatttcatctca |
12915468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 306 - 585
Target Start/End: Original strand, 12919476 - 12919755
Alignment:
| Q |
306 |
attgttaacgattactgcattggtgtaacttaagagcagctgtattaattgctattaccaatttttcaattttttgcttcctaaattctccaacaatgat |
405 |
Q |
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| T |
12919476 |
attgttagcgattactgcattggtgtaacttaagagcagctgtattaattgctattaccaatttttcaattttttgctttctaaattctccaacaatgat |
12919575 |
T |
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| Q |
406 |
ggggcaatttgagtcaagatggtagatggtcttttcttctatatgaatgatcattaggtaccaatgtcccatacttgttctgattggaacatatatctat |
505 |
Q |
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| T |
12919576 |
ggggcaattggagtcaagatggtagatggtcttttcttctatattaatgatcattaggtaccaatgtcccatacttgttctgattggaacatatatctat |
12919675 |
T |
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| Q |
506 |
atgcacaacaacaatccattattgaagccaacatatttgttgtatcactttcaacatctcagaaaacatatttcatctca |
585 |
Q |
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| T |
12919676 |
atgcacaacaacaatccattattgaagccaacatatttgttatatcactttcaacatctcagaaaacatatttcatctca |
12919755 |
T |
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