View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16592_low_91 (Length: 259)
Name: NF16592_low_91
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16592_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 45130281 - 45130061
Alignment:
| Q |
32 |
accatgaaagtgttttgtttttctcctcattttcatgcagacaaaattgttacccttcctggacaaccacaaaacatagcctttcaacaattctcaggat |
131 |
Q |
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| T |
45130281 |
accatgaaagtgttttgtttctctcctcattttcatgcagacaaaattgttacccttcctggacaaccacaaaacatagcctttcaacaattctcaggat |
45130182 |
T |
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| Q |
132 |
atgtcacagttgataacaaaaaacacaagtcacttttttactactttgctgaatcagaaactgatccttcttcaaaacctcttgttctttggctcaatgg |
231 |
Q |
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| T |
45130181 |
atgtcacagttgataacaaaaaacacaagtcacttttttactactttgctgaatcagaaactgatccttcttcaaaacctcttgttctttggctcaatgg |
45130082 |
T |
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| Q |
232 |
aggacctggttgttcttctct |
252 |
Q |
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| T |
45130081 |
tggacctggttgttcttctct |
45130061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 40282364 - 40282219
Alignment:
| Q |
86 |
cttcctggacaaccacaaaacatagcctttcaacaattctcaggatatgtcacagttgataacaaaaaacacaagtcacttttttactactttgctgaat |
185 |
Q |
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| T |
40282364 |
cttcctggacaacccca---cataggctttcaacacttctcaggatatgttacagttgatgaaaaaaaacgcagatatctcttttactattttgttgaat |
40282268 |
T |
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| Q |
186 |
cagaaactgatccttcttcaaaacctcttgttctttggctcaatggagg |
234 |
Q |
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| T |
40282267 |
cagaaactggtccatcttcaaagcctttagtcctttggctcaatggagg |
40282219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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