View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16592_low_94 (Length: 255)

Name: NF16592_low_94
Description: NF16592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16592_low_94
NF16592_low_94
[»] chr3 (15 HSPs)
chr3 (1-225)||(45676608-45676832)
chr3 (203-255)||(45676827-45676879)
chr3 (172-255)||(26772789-26772873)
chr3 (172-250)||(52741504-52741583)
chr3 (171-248)||(44198805-44198883)
chr3 (171-221)||(39583220-39583270)
chr3 (171-252)||(46940761-46940843)
chr3 (164-248)||(53785747-53785832)
chr3 (151-223)||(37132970-37133042)
chr3 (194-255)||(38146087-38146149)
chr3 (172-221)||(37992398-37992447)
chr3 (178-223)||(49018027-49018072)
chr3 (181-248)||(32546833-32546901)
chr3 (191-250)||(38670891-38670951)
chr3 (173-217)||(44429689-44429733)
[»] chr8 (8 HSPs)
chr8 (123-248)||(38815332-38815458)
chr8 (171-255)||(39434698-39434783)
chr8 (171-221)||(500293-500343)
chr8 (171-248)||(6592613-6592691)
chr8 (173-251)||(24125063-24125142)
chr8 (171-217)||(8882397-8882443)
chr8 (173-248)||(3188007-3188083)
chr8 (175-223)||(35739981-35740029)
[»] chr4 (11 HSPs)
chr4 (171-255)||(53619617-53619702)
chr4 (172-248)||(600684-600761)
chr4 (136-221)||(50000881-50000966)
chr4 (171-221)||(23255770-23255820)
chr4 (171-248)||(30940730-30940807)
chr4 (171-255)||(31847118-31847203)
chr4 (171-255)||(55933453-55933538)
chr4 (149-251)||(50462915-50463018)
chr4 (171-221)||(132451-132501)
chr4 (176-248)||(16957580-16957653)
chr4 (179-220)||(34536931-34536972)
[»] chr5 (16 HSPs)
chr5 (171-250)||(32230498-32230578)
chr5 (171-255)||(37873629-37873714)
chr5 (171-248)||(14423716-14423794)
chr5 (171-248)||(35310486-35310564)
chr5 (171-248)||(13166901-13166979)
chr5 (171-223)||(15292017-15292069)
chr5 (171-223)||(43129598-43129650)
chr5 (171-248)||(33692046-33692124)
chr5 (171-247)||(27336732-27336809)
chr5 (173-248)||(25663025-25663101)
chr5 (164-254)||(34335369-34335460)
chr5 (171-223)||(8858980-8859032)
chr5 (194-248)||(42921735-42921790)
chr5 (171-221)||(26212574-26212624)
chr5 (173-223)||(38875702-38875752)
chr5 (203-255)||(430633-430686)
[»] chr7 (15 HSPs)
chr7 (164-248)||(21326822-21326907)
chr7 (171-255)||(28517278-28517363)
chr7 (171-250)||(10905154-10905233)
chr7 (171-248)||(982987-983065)
chr7 (171-248)||(19277331-19277409)
chr7 (146-250)||(34067828-34067932)
chr7 (191-248)||(24527627-24527685)
chr7 (171-221)||(4501324-4501374)
chr7 (171-248)||(22198024-22198102)
chr7 (171-248)||(22239719-22239797)
chr7 (173-248)||(32584639-32584715)
chr7 (178-221)||(27521537-27521580)
chr7 (171-252)||(3676673-3676755)
chr7 (171-248)||(30216049-30216127)
chr7 (176-248)||(40726476-40726549)
[»] scaffold0490 (1 HSPs)
scaffold0490 (171-248)||(6372-6450)
[»] chr6 (11 HSPs)
chr6 (71-248)||(33220602-33220780)
chr6 (171-248)||(34304534-34304612)
chr6 (171-255)||(17249296-17249381)
chr6 (173-221)||(45670-45718)
chr6 (172-255)||(29338071-29338155)
chr6 (172-222)||(959645-959695)
chr6 (171-221)||(357708-357758)
chr6 (171-248)||(4206587-4206665)
chr6 (191-255)||(3714948-3715013)
chr6 (177-248)||(4165919-4165991)
chr6 (171-223)||(34554268-34554320)
[»] chr2 (15 HSPs)
chr2 (172-248)||(4413058-4413135)
chr2 (171-251)||(9685406-9685487)
chr2 (171-248)||(28225038-28225116)
chr2 (149-248)||(41867877-41867977)
chr2 (171-223)||(2888580-2888632)
chr2 (171-221)||(5532485-5532535)
chr2 (171-248)||(19161774-19161852)
chr2 (164-247)||(23484922-23485006)
chr2 (173-255)||(3968402-3968485)
chr2 (171-248)||(17344676-17344754)
chr2 (171-221)||(27502428-27502478)
chr2 (179-248)||(34814818-34814888)
chr2 (191-255)||(33612558-33612623)
chr2 (172-217)||(44686490-44686535)
chr2 (172-220)||(16351833-16351881)
[»] chr1 (12 HSPs)
chr1 (173-251)||(15584909-15584988)
chr1 (171-247)||(19035486-19035563)
chr1 (171-248)||(31737314-31737392)
chr1 (171-247)||(21473042-21473119)
chr1 (171-255)||(25375824-25375909)
chr1 (172-248)||(29169785-29169862)
chr1 (171-248)||(28041118-28041196)
chr1 (171-248)||(45659639-45659717)
chr1 (172-221)||(22346961-22347010)
chr1 (164-223)||(20259781-20259840)
chr1 (171-248)||(34644604-34644682)
chr1 (171-221)||(50161408-50161458)
[»] scaffold0493 (1 HSPs)
scaffold0493 (191-250)||(8527-8587)
[»] scaffold0148 (1 HSPs)
scaffold0148 (173-223)||(33314-33364)
[»] scaffold0031 (1 HSPs)
scaffold0031 (193-255)||(49442-49505)
[»] scaffold1768 (1 HSPs)
scaffold1768 (171-250)||(175-255)
[»] scaffold0119 (1 HSPs)
scaffold0119 (171-223)||(16198-16250)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45676608 - 45676832
Alignment:
Q  1 gaacttcttgtgttactcacttaatggaagatcgacacttaggcaagtagatgttaaggtatacaagttggttgggggaaaacatgcatatgtaaattta 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676608 gaacttcttgtgttactcacttgatggaagatcgacacttaggcaagtagatgttaaggtatacaagttggttgggggaaaacatgcatatgtaaattta 45676707  T
Q  101 accggagttttacaacttgcgagattggggatcgaggcttgtatggtgggacagacagcattcaaagccacgtcaagcaaagtgaccaagcatgagaaaa 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  45676708 accggagttttacaacttgtgagattggggatcgaggcttgtatggtgggacatacagcattcaaggccacgtcaagcaaagtgaccaagcataagaaaa 45676807  T
Q  201 cgtgttctgacaatcaacatgttct 225  Q
    |||||||||||||||||||||||||    
T  45676808 cgtgttctgacaatcaacatgttct 45676832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 45676827 - 45676879
Alignment:
Q  203 tgttctgacaatcaacatgttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676827 tgttctgacaatcaacatgttctataccatctgcgtttgacacttttgacttc 45676879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 26772873 - 26772789
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||| ||||    
T  26772873 gtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttc 26772789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 52741504 - 52741583
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttg 250  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||||    
T  52741504 gtcaaacaaattgaccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 52741583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 44198883 - 44198805
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||| |||| ||||||||| |||||||||| |||||||||| || |||||||| ||| |||||||||||    
T  44198883 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacacttt 44198805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 39583220 - 39583270
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  39583220 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatg 39583270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 46940761 - 46940843
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgac 252  Q
    |||||||||||||| |||| ||| ||||||| ||||| ||||||||||||| || |||||||| ||  |||||||||||||||    
T  46940761 cgtcaagcaaagtggccaaacattagaaaacatgttccgacaatcaacatgcttttataccatttgtttttgacacttttgac 46940843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 53785832 - 53785747
Alignment:
Q  164 aaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||| ||||||| || ||| |||| || |||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  53785832 aaagccgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 53785747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 37132970 - 37133042
Alignment:
Q  151 acagacagcattcaaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||||||||  | ||||| |||||||||||||||   || ||||||||| |||||||||||||||||||||||    
T  37132970 acagacagccctaaaagctacgtcaagcaaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtt 37133042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 38146149 - 38146087
Alignment:
Q  194 gagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||| |||||||| |||||||||||||| || |||||||| | | ||||||||||||||||||    
T  38146149 gagacaacgtgttttgacaatcaacatgtttttataccatttacatttgacacttttgacttc 38146087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 37992447 - 37992398
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    ||||| |||||||||||| |||||| || | |||||||||||||||||||    
T  37992447 gtcaaacaaagtgaccaaacatgaggaagcatgttctgacaatcaacatg 37992398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 49018072 - 49018027
Alignment:
Q  178 caaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||||||||||| |||||||||  ||||||| ||||||||||||||    
T  49018072 caaagtgaccaaacatgagaaagtgtgttctaacaatcaacatgtt 49018027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 32546901 - 32546833
Alignment:
Q  181 agtgaccaagcatgagaaaacgtgttctgacaatcaacat-gttctataccatctgcgtttgacacttt 248  Q
    |||| |||| ||||||||| ||||||| ||||||||||||  || |||||||| ||| |||||||||||    
T  32546901 agtggccaaacatgagaaagcgtgttcggacaatcaacatacttttataccatttgcttttgacacttt 32546833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 38670891 - 38670951
Alignment:
Q  191 catgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttg 250  Q
    ||||||||| ||||||||||||||||||||| || ||||| || ||  |||||||||||||    
T  38670891 catgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttg 38670951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 44429733 - 44429689
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaa 217  Q
    ||||||||| ||||||||||||| ||||| ||||| |||||||||    
T  44429733 tcaagcaaaatgaccaagcatgaaaaaacatgttccgacaatcaa 44429689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 38815458 - 38815332
Alignment:
Q  123 gattggggatcgaggcttgtatggtgggacagacagcattcaaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg- 221  Q
    |||| ||| ||| ||||| |||||| |||||||||||  | ||||||||| ||| ||||||| |||| ||||||||| |||||||||||||||||||||     
T  38815458 gattaggggtcggggcttttatggtaggacagacagccctaaaagccacgccaaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgc 38815359  T
Q  222 ttctataccatctgcgtttgacacttt 248  Q
    || |||||||| ||| |||||||||||    
T  38815358 ttttataccatttgcttttgacacttt 38815332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 39434783 - 39434698
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||| ||  ||||||||||||||||||    
T  39434783 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttc 39434698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 500343 - 500293
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  500343 cgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatg 500293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 6592691 - 6592613
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||| |||| ||||||||| |||||||| |||||||||||| || || ||||| ||| |||||||||||    
T  6592691 cgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacacttt 6592613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 24125142 - 24125063
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttga 251  Q
    ||||||||| || |||| ||||||||| |||| |||||||||||||||| || |||||||| ||| ||||||| ||||||    
T  24125142 tcaagcaaaatggccaaacatgagaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttga 24125063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 8882443 - 8882397
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaa 217  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||    
T  8882443 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaa 8882397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 3188083 - 3188007
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||| | || |||||| || ||||||||||||||||||||| || |||||||| ||| ||||| |||||    
T  3188083 tcaagcaaagtggcaaaacatgaggaagcgtgttctgacaatcaacatgcttttataccatttgcttttgaaacttt 3188007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 35739981 - 35740029
Alignment:
Q  175 aagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||||||||| |||| ||||||||| || ||||||||||||||||||||    
T  35739981 aagcaaagtggccaaacatgagaaagcgggttctgacaatcaacatgtt 35740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 53619702 - 53619617
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||| ||  ||||||||||||||||||    
T  53619702 cgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttc 53619617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 600684 - 600761
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||||||| |||||||||||||||||| ||||| |||||| || |||||||| ||| |||| ||||||    
T  600684 gtcaagcaaagtgaccaaacatgagaaaacgtgttctaacaattaacatgcttttataccatttgcttttgtcacttt 600761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 50000881 - 50000966
Alignment:
Q  136 ggcttgtatggtgggacagacagcattcaaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    ||||| || ||| |||||||||||  | |||||  ||||||||||||||  ||| ||||||||| |||||||||||||||||||||    
T  50000881 ggcttttacggtaggacagacagctctaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatg 50000966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 23255820 - 23255770
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    |||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  23255820 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaattaacatg 23255770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 30940730 - 30940807
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||| ||||||  ||| ||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  30940730 cgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttataccat-tgcttttgacacttt 30940807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 31847203 - 31847118
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    ||||||||||||||  ||| ||||||||| | |||||||||| |||||||| || | |||||| ||| ||||||||||||| ||||    
T  31847203 cgtcaagcaaagtggtcaaacatgagaaaccatgttctgacagtcaacatgtttttttaccatttgcttttgacacttttggcttc 31847118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 55933453 - 55933538
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||| ||||||| |||| |||||||||   |||||| |||||||||||| || |||||||| ||| ||||||||||| ||||||    
T  55933453 cgtcaaacaaagtggccaaacatgagaaagtttgttctaacaatcaacatgcttttataccatttgcttttgacactttcgacttc 55933538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 50462915 - 50463018
Alignment:
Q  149 ggacagacagcattcaaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacactt 247  Q
    ||||||||||| || ||||   ||||||||||  ||||||| |||||||||  || ||| ||||||||||||| ||  ||||||| ||| ||||||||||    
T  50462915 ggacagacagccttaaaagttgcgtcaagcaagatgaccaaacatgagaaagtgtcttccgacaatcaacatgctttcataccatttgcttttgacactt 50463014  T
Q  248 ttga 251  Q
    ||||    
T  50463015 ttga 50463018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 132501 - 132451
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    ||||||||||| || | || ||||||||| |||||||||||||||||||||    
T  132501 cgtcaagcaaaatggcaaaacatgagaaatcgtgttctgacaatcaacatg 132451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 16957653 - 16957580
Alignment:
Q  176 agcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||| ||||||| |||||||||  ||| ||||| |||||||||| || |||||||| ||| |||||||||||    
T  16957653 agcaaaatgaccaaacatgagaaagtgtgctctgataatcaacatgcttatataccatttgcttttgacacttt 16957580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 34536931 - 34536972
Alignment:
Q  179 aaagtgaccaagcatgagaaaacgtgttctgacaatcaacat 220  Q
    ||||||||||| ||||| |||||||||| |||||||||||||    
T  34536931 aaagtgaccaaacatgaaaaaacgtgttatgacaatcaacat 34536972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 32230498 - 32230578
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttg 250  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||| | || ||||||||||||||| ||||||||||    
T  32230498 cgtcaagcaaagtgaccaaacatgagaaaatgtgttctgacaatcaacaagcttttataccatctgcgttcgacacttttg 32230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 37873629 - 37873714
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||| ||| ||||||||||||| ||||    
T  37873629 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttttggcttc 37873714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 14423794 - 14423716
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  14423794 cgtcaagcaaagtgaccgaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 14423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 35310564 - 35310486
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||| |||| ||||||||| | ||||||||||||||||||| || |||||||||||| |||||||||||    
T  35310564 cgtcaagcaaagtggccaaacatgagaaagcatgttctgacaatcaacatgcttttataccatctgcttttgacacttt 35310486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 13166901 - 13166979
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  13166901 cgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 13166979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 15292017 - 15292069
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  15292017 cgtcaaacaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtt 15292069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 43129650 - 43129598
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  43129650 cgtcaagcaaagtggtcaaacatgagaaaacgtgttctgacaatcaacatgtt 43129598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 33692046 - 33692124
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||| |||| ||||| |||||||||| |||||||||||||| || | |||||| ||| |||||||||||    
T  33692046 cgtcaagcaaagtggccaaacatgacaaaacgtgttatgacaatcaacatgcttttgtaccatttgcttttgacacttt 33692124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 27336809 - 27336732
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacat-gttctataccatctgcgtttgacactt 247  Q
    ||||||||||||||  ||| ||||||||| ||||||||||||||||||||  || |||||||| ||| ||||||||||    
T  27336809 cgtcaagcaaagtggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatttgcttttgacactt 27336732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 25663025 - 25663101
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||| ||||||| |||| ||||||||| |||||||||| |||||||||| || |||||||| ||| |||||||||||    
T  25663025 tcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacacttt 25663101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 34335460 - 34335369
Alignment:
Q  164 aaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgactt 254  Q
    ||||||| ||||||||||  | |||| ||||||||| ||||| ||||||||||||||| || |||||||| ||  ||||||||||| |||||    
T  34335460 aaagccatgtcaagcaaaagggccaaacatgagaaagcgtgtcctgacaatcaacatgcttttataccatttgtttttgacactttcgactt 34335369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 8859032 - 8858980
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||||||||||||   ||| ||||||||| |||||||||||||||||||||||    
T  8859032 cgtcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacatgtt 8858980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 42921790 - 42921735
Alignment:
Q  194 gagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||||||||||||||||| || |||||||| ||| | |||||||||    
T  42921790 gagaaaacgtgttctgacaatcaacatgcttttataccatttgcttatgacacttt 42921735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 26212574 - 26212624
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    |||||||||||||| |||| ||||||||| ||| ||||||| |||||||||    
T  26212574 cgtcaagcaaagtggccaaacatgagaaagcgtattctgacgatcaacatg 26212624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 38875752 - 38875702
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||| ||||| |||||| |||||||||  ||||||||||||||||||||||    
T  38875752 tcaaacaaagcgaccaaacatgagaaagtgtgttctgacaatcaacatgtt 38875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 430686 - 430633
Alignment:
Q  203 tgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    ||||||||||||||||||| || |||||||| ||| ||||||||||||| ||||    
T  430686 tgttctgacaatcaacatgcttttataccatttgcttttgacacttttgtcttc 430633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 21326822 - 21326907
Alignment:
Q  164 aaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  21326822 aaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 21326907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 28517278 - 28517363
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||||||||||| |||| ||||||||| ||||||  ||||||||||||| || |||||||| ||| ||||||||||||||||||    
T  28517278 cgtcaagcaaagtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttataccatttgcttttgacacttttgacttc 28517363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 10905233 - 10905154
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgttctataccatctgcgtttgacacttttg 250  Q
    |||||||||||||| ||||  ||||||||| ||||||||||| |||||||| | |||||||| ||| |||||||||||||    
T  10905233 cgtcaagcaaagtggccaaatatgagaaaaagtgttctgacactcaacatgctttataccatttgcttttgacacttttg 10905154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 983065 - 982987
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||| ||| ||||| |||||    
T  983065 cgtcaagcaaagtggccaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatacttt 982987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 19277409 - 19277331
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||  |||| ||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  19277409 cgtcaagcaaagtagccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 19277331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 34067828 - 34067932
Alignment:
Q  146 gtgggacagacagcattcaaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgttctataccatctgcgtttgacac 245  Q
    ||||||||||||||  || ||| | | |||||| |||||||||| |||||||||  ||||| ||||||||||||| |||||| |||| ||  ||||||||    
T  34067828 gtgggacagacagccctcgaagtcgcttcaagccaagtgaccaaacatgagaaagtgtgttttgacaatcaacattttctatgccatttgtatttgacac 34067927  T
Q  246 ttttg 250  Q
    |||||    
T  34067928 ttttg 34067932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 24527685 - 24527627
Alignment:
Q  191 catgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  24527685 catgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 24527627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 4501374 - 4501324
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    |||||| ||||||| |||| ||||||||| |||||||||||||||||||||    
T  4501374 cgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatg 4501324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 22198102 - 22198024
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||||||||||||||| |||||||||  ||||||  |||||||||||| || |||||||| ||| |||| ||||||    
T  22198102 cgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgtttttataccatttgcttttgtcacttt 22198024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 22239719 - 22239797
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||||||||||||||| |||||||||  ||||||  |||||||||||| || |||||||| ||| |||| ||||||    
T  22239719 cgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgtttttataccatttgcttttgtcacttt 22239797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 32584715 - 32584639
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||| |||||||  ||| ||||||||||||||||||||||||||| ||| || || ||||| ||| |||||||||||    
T  32584715 tcaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaagatgcttttacaccatttgcttttgacacttt 32584639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 27521580 - 27521537
Alignment:
Q  178 caaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    |||||||  ||| |||||||||||||||||||||||||||||||    
T  27521580 caaagtggtcaaacatgagaaaacgtgttctgacaatcaacatg 27521537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 3676755 - 3676673
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgac 252  Q
    ||||||||||||||  ||| ||| ||||| |||||||| || ||||| ||| || |||||||| ||| |||||||||||||||    
T  3676755 cgtcaagcaaagtggtcaaacatcagaaagcgtgttcttactatcaatatgcttttataccatttgcttttgacacttttgac 3676673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 30216049 - 30216127
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||||||| ||  |||  |||||||| |||||| |||||||||||||| || |||||||| ||| |||||||||||    
T  30216049 cgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttataccatttgcttttgacacttt 30216127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 40726476 - 40726549
Alignment:
Q  176 agcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||||| |||| ||| | |||| |||||||||||||||||||| || |||||||| ||  |||||||||||    
T  40726476 agcaaagtggccaaacataataaaatgtgttctgacaatcaacatgtttttataccatttgtttttgacacttt 40726549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 6450 - 6372
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||| |||||| |||| ||||||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  6450 cgtcaagtaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttctataccatttgcttttgacacttt 6372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 248
Target Start/End: Original strand, 33220602 - 33220780
Alignment:
Q  71 gttgggggaaaacatgcatatgtaaatttaaccggagttttacaacttgcgagattggggatcgaggcttgtatggtgggacagacagcattcaaagcca 170  Q
    ||||| ||||||||||||| ||| ||||| || || |||| || ||||| | | || ||| ||| ||||| || ||| |||||||||||  | |||||      
T  33220602 gttggaggaaaacatgcatgtgtgaatttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacagctctaaaagctg 33220701  T
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    | |||||||||||| |||| ||||||||| |||||  |||||||||||||| || |||||||| ||| |||||||||||    
T  33220702 catcaagcaaagtggccaaacatgagaaagcgtgtgttgacaatcaacatgcttttataccatttgcttttgacacttt 33220780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 34304612 - 34304534
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||||||| | ||||| ||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  34304612 cgtcaagcaaaataaccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 34304534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 17249296 - 17249381
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||| ||||||| |||| |||||||||  |||||||||||||||||||| || |||||||| ||| ||||||||||||| ||||    
T  17249296 cgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttc 17249381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 45670 - 45718
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  45670 tcaagcaaagtgatcaaacatgagaaaacgtgttctgacaatcaacatg 45718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 29338071 - 29338155
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgttc-tataccatctgcgtttgacacttttgacttc 255  Q
    |||||||||||   |||| |||||||||||||||||| |||||||||||| || |||||||| ||| |||||||||| |||||||    
T  29338071 gtcaagcaaagctgccaaacatgagaaaacgtgttctaacaatcaacatgctcttataccatttgcttttgacacttctgacttc 29338155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 959695 - 959645
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgt 222  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  959695 gtcaagcaaagtggctaaccatgagaaaacgtgttctgacaatcaacatgt 959645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 357708 - 357758
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    |||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  357708 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatgaacatg 357758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 4206587 - 4206665
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||| | || ||||||||| |||||||||||||| |||||| || |||| ||| ||| |||||||||||    
T  4206587 cgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacacttt 4206665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 3715013 - 3714948
Alignment:
Q  191 catgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||||||||||||||| ||||| |||||| || |||| ||||||  ||||||||||||||||||    
T  3715013 catgagaaaacgtgttctcacaattaacatgtttttatatcatctgtttttgacacttttgacttc 3714948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 4165919 - 4165991
Alignment:
Q  177 gcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||| | || ||||||||| ||||||||||||||||||||| || |||| ||| ||| |||||||||||    
T  4165919 gcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacacttt 4165991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 34554268 - 34554320
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||||||||||  |||||| ||||||||| |||||||||| |||||| |||||    
T  34554268 cgtcaagcaaaacgaccaaacatgagaaagcgtgttctgataatcaagatgtt 34554320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 4413058 - 4413135
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  4413058 gtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 4413135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 9685406 - 9685487
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttga 251  Q
    |||||||||||||| |||| ||||| ||| ||||||||||||||||||||| || |||||||| ||| ||||||||||||||    
T  9685406 cgtcaagcaaagtggccaaacatgaaaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttga 9685487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 28225116 - 28225038
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||||||||  |||||||| ||| ||||||||||||||||| || |||||||| ||| |||||||||||    
T  28225116 cgtcaagcaaagtgaccaaatatgagaaagcgtattctgacaatcaacatgcttttataccatttgcttttgacacttt 28225038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 41867877 - 41867977
Alignment:
Q  149 ggacagacagcattcaaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacactt 247  Q
    |||||| |||| || |||||  ||||||||||||||  ||| ||||||||| | ||||||||||||||||||| || |||||||| ||| ||||||||||    
T  41867877 ggacaggcagccttaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttataccatttgcttttgacactt 41867976  T
Q  248 t 248  Q
    |    
T  41867977 t 41867977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 2888632 - 2888580
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||| |||||||||  ||| |||||||||||||||||||||||||||||||||    
T  2888632 cgtctagcaaagtggacaaacatgagaaaacgtgttctgacaatcaacatgtt 2888580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 5532535 - 5532485
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    ||||||||||||||  ||| |||||||||||||||| ||||||||||||||    
T  5532535 cgtcaagcaaagtggtcaaacatgagaaaacgtgttgtgacaatcaacatg 5532485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 19161774 - 19161852
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||| ||||||  ||| ||||| ||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  19161774 cgtcaagaaaagtgggcaaacatgaaaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttt 19161852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 23484922 - 23485006
Alignment:
Q  164 aaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacactt 247  Q
    ||||| ||||||| ||||||| ||||  |||||||| | ||||||||||||||||||| || |||||||| ||  ||||||||||    
T  23484922 aaagctacgtcaaacaaagtggccaaatatgagaaagcatgttctgacaatcaacatgcttttataccatttgtttttgacactt 23485006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 3968402 - 3968485
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    ||||||||||||  |||  |||||||||| |||| |||||||||| ||| || ||||| || ||||||||||| ||||||||||    
T  3968402 tcaagcaaagtggtcaaatatgagaaaacatgttttgacaatcaatatgcttttatacaatttgcgtttgacatttttgacttc 3968485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 17344754 - 17344676
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||| || ||| |||| || ||||||||||||| | |||||||||||| || |||||||| ||| |||||||||||    
T  17344754 cgtcaagtaaggtggccaaacacgagaaaacgtgttttcacaatcaacatgcttttataccatttgcttttgacacttt 17344676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 27502478 - 27502428
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    ||||||||||||||  ||| ||||||||||||||||| ||||| |||||||    
T  27502478 cgtcaagcaaagtggtcaaacatgagaaaacgtgttccgacaaacaacatg 27502428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 34814818 - 34814888
Alignment:
Q  179 aaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||| ||| ||||||||| ||||||||||||||||| ||| || |||||||| ||| || ||||||||    
T  34814818 aaagtgatcaaacatgagaaagcgtgttctgacaatcaatatgcttttataccatttgctttcgacacttt 34814888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 33612558 - 33612623
Alignment:
Q  191 catgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    |||||||||||||||| |||||||||||||| || ||||| || ||  ||||||||||||| ||||    
T  33612558 catgagaaaacgtgttttgacaatcaacatgattttatacaatttgtatttgacacttttggcttc 33612623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 44686535 - 44686490
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaa 217  Q
    ||||||||| ||| |||| ||||||||| |||||||||||||||||    
T  44686535 gtcaagcaatgtggccaaacatgagaaagcgtgttctgacaatcaa 44686490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 16351833 - 16351881
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacat 220  Q
    |||||||||||||  ||| |||||||||| ||||||| |||||||||||    
T  16351833 gtcaagcaaagtggtcaaacatgagaaaatgtgttctcacaatcaacat 16351881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 15584988 - 15584909
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttga 251  Q
    ||||||||||||| ||| |||  |||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||    
T  15584988 tcaagcaaagtgatcaaacattggaaaacgtattctgacaatcaacatgtttctataccatttgcgtttgacatttttga 15584909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 19035563 - 19035486
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacactt 247  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||| | | ||||||||||    
T  19035563 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacactt 19035486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 31737314 - 31737392
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||||||||||| |||| ||||||||||| | ||||||||||||||||| || |||||||| ||  |||||||||||    
T  31737314 cgtcaagcaaagtggccaaacatgagaaaacatattctgacaatcaacatgcttttataccatttgtttttgacacttt 31737392  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 21473119 - 21473042
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacactt 247  Q
    ||||||| ||| || |||| ||||||||| ||||||||||||||||||||| || |||||||| ||| ||||||||||    
T  21473119 cgtcaagtaaaatggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactt 21473042  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 25375824 - 25375909
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    ||||||||||||||||||| ||||| ||||| |||||| || ||||||||| || |||||||| |||  |||||||||||| ||||    
T  25375824 cgtcaagcaaagtgaccaaacatgacaaaacatgttcttaccatcaacatgtttttataccatttgctattgacacttttggcttc 25375909  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 29169785 - 29169862
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||| || ||| |||| || |||||||||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  29169785 gtcaagtaaggtggccaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 29169862  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 28041118 - 28041196
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||| ||||||| |||| |||||||||  |||||||||||||||||| | || |||||||| ||| |||||||||||    
T  28041118 cgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacaggtttttataccatttgcttttgacacttt 28041196  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 45659639 - 45659717
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    ||||||| || ||| |||| || |||||| ||||||||||||||||||||| || |||||||| ||| |||||||||||    
T  45659639 cgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttt 45659717  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 22347010 - 22346961
Alignment:
Q  172 gtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    ||||||||||||| ||||  |||||||| |||||||||||||||||||||    
T  22347010 gtcaagcaaagtggccaaatatgagaaagcgtgttctgacaatcaacatg 22346961  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 20259781 - 20259840
Alignment:
Q  164 aaagccacgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    ||||| |||||||||||||||   ||  |||||||| |||||||||||||||||||||||    
T  20259781 aaagctacgtcaagcaaagtggttaaaaatgagaaagcgtgttctgacaatcaacatgtt 20259840  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 34644682 - 34644604
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttt 248  Q
    |||||| ||||||| |||| ||||||||| ||||||||||||| | ||||| || |||||||| ||  |||||||||||    
T  34644682 cgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaacctacatgcttttataccatttgtttttgacacttt 34644604  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 50161408 - 50161458
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg 221  Q
    ||||||||||||||  ||| ||||||||| |||||||| ||||||||||||    
T  50161408 cgtcaagcaaagtggacaaacatgagaaagcgtgttctcacaatcaacatg 50161458  T

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Target: scaffold0493 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 8527 - 8587
Alignment:
Q  191 catgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttg 250  Q
    ||||||||||| ||||||||||||||||||| || |||||||| ||||||| |||||||||    
T  8527 catgagaaaacatgttctgacaatcaacatgtttttataccatttgcgtttaacacttttg 8587  T

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Target: scaffold0148 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 33364 - 33314
Alignment:
Q  173 tcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||||||||||| | || ||||||||| |||||||||||||||||||||||    
T  33364 tcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgtt 33314  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 49505 - 49442
Alignment:
Q  193 tgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttgacttc 255  Q
    ||||||| |||||||||||||||||| || || |||||||| ||| ||||||||||| ||||||    
T  49505 tgagaaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacactttcgacttc 49442  T

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Target: scaffold1768 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 175 - 255
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatg-ttctataccatctgcgtttgacacttttg 250  Q
    |||||||||||||| |||| ||||||| |  | ||| |||| ||||||||| || |||||||| || ||||||||||||||    
T  175 cgtcaagcaaagtggccaaacatgagacagtgggttatgaccatcaacatgcttttataccatttgtgtttgacacttttg 255  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 16250 - 16198
Alignment:
Q  171 cgtcaagcaaagtgaccaagcatgagaaaacgtgttctgacaatcaacatgtt 223  Q
    |||||| |||| || |||| ||||||||||| |||||||||||| ||||||||    
T  16250 cgtcaaacaaaatggccaaacatgagaaaacatgttctgacaataaacatgtt 16198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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