View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16593_high_3 (Length: 452)
Name: NF16593_high_3
Description: NF16593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16593_high_3 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 7913622 - 7913940
Alignment:
| Q |
18 |
gtgagagtgcagtgaacctcgctgtaagttttcttggcttcaagcctaatccttacctttccagtgatcatactattttaaccttgatctgccttctaat |
117 |
Q |
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| T |
7913622 |
gtgagagtgcagtgaacctcgctgtaagttttcttggcttcaagcctaatccttacctttccagtgatcatactattttaaccttgatctgccttctaat |
7913721 |
T |
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| Q |
118 |
acggtttgtcccttcttctgcatgaactggttatcagaagcagaaggagaataaaagaagaaaaataaacatatggtagttataacgttgttgtggaaat |
217 |
Q |
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| T |
7913722 |
acggtttgtcccttcttctgcatgaactggttatcagaagcagaaggagaataaaataagaaaaataaacatatggtagttataacgttgttgtggaaat |
7913821 |
T |
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| Q |
218 |
atagactaggtagatcacttgatactactatgatgagtatacattaaaatgtttagagacataagcttaattaaccatttgtatcaggtttagagcttga |
317 |
Q |
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| T |
7913822 |
atagactaggtagatcatttgatactactatgatgagtatgcattaaaatgtttagagacataagcttaattaaccatttgtatcaggtttagagcttga |
7913921 |
T |
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| Q |
318 |
agctttcatttgatgactt |
336 |
Q |
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| T |
7913922 |
agctttcatttgatcactt |
7913940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 7913939 - 7913992
Alignment:
| Q |
399 |
ttgtttgcacggaagaattcatctttcattatcttcactatatgactcagtatt |
452 |
Q |
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| T |
7913939 |
ttgtttgcatggaagaattcatctttcattatcttcactatatgactcagtatt |
7913992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 442
Target Start/End: Complemental strand, 151244 - 151206
Alignment:
| Q |
404 |
tgcacggaagaattcatctttcattatcttcactatatg |
442 |
Q |
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| T |
151244 |
tgcagggaagaattcatccttcattatcttcactatatg |
151206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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