View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16593_high_8 (Length: 228)
Name: NF16593_high_8
Description: NF16593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16593_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 8613433 - 8613239
Alignment:
| Q |
13 |
agcagagaacatatcaggaaacacaatggcttatccgcgttgagaagaatctcaataatcagataggctaaaccaatctataccaaacattactttcaaa |
112 |
Q |
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| T |
8613433 |
agcagagaacatgtcaggaaacacaatagcttatctgcgttgagaagaatctcaataatcagataggctgaaccaatctataccaaacattactttcaaa |
8613334 |
T |
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| Q |
113 |
tgataagtttacnnnnnnnnnnnnnnnnnnnttcgttgattatttacggtatatatagacataatgaacagcttttcagaagattcacaagccttg |
208 |
Q |
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| T |
8613333 |
tggtaagtttacaaaaaatgtaaaaaaaaattt-gttgattatttacagtatatatagacataatgaacagcttttcagaagattcacaagccttg |
8613239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 8645245 - 8645356
Alignment:
| Q |
13 |
agcagagaacatatcaggaaacacaatggcttatccgcgttgagaagaatctcaataatcagataggctaaaccaatctataccaaacattactttcaaa |
112 |
Q |
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|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8645245 |
agcagagaacatgtcagaaaacacaatagcttatccgcgttgagaagaatctcaataataagataggctaaaccaatctataccaaacattactttcaaa |
8645344 |
T |
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| Q |
113 |
tgataagtttac |
124 |
Q |
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| T |
8645345 |
tggtaagtttac |
8645356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 8595785 - 8595845
Alignment:
| Q |
148 |
ttgattatttacggtatatatagacataatgaacagcttttcagaagattcacaagccttg |
208 |
Q |
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| T |
8595785 |
ttgattactcacagtatatatagacataatgaacagcttttcagaagattcacaagccttg |
8595845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 8645375 - 8645437
Alignment:
| Q |
144 |
ttcgttgattatttacggtatatatagacataatgaacagcttttcagaagattcacaagccttg |
208 |
Q |
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| T |
8645375 |
ttccttgattatttacagtatatatagaca--atgaacagctttgcagaagattcacaagccttg |
8645437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 8537341 - 8537394
Alignment:
| Q |
162 |
tatatatagacataatgaacagcttttcagaagattcacaagccttggattgca |
215 |
Q |
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| T |
8537341 |
tatatatagatataatgaacaccttttcagaagattcacaaggcttgtattgca |
8537394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 8584562 - 8584615
Alignment:
| Q |
148 |
ttgattatttacggtatatatagacataatgaacagcttttcagaagattcaca |
201 |
Q |
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| T |
8584562 |
ttgattattcacagtatatatagacataatgaagagctattcgtaagattcaca |
8584615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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