View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16593_low_1 (Length: 866)
Name: NF16593_low_1
Description: NF16593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16593_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 180 - 848
Target Start/End: Original strand, 19765149 - 19765827
Alignment:
| Q |
180 |
ctaaattggatcataatcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtcttatatatcatagaataaaa |
279 |
Q |
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| T |
19765149 |
ctaaattggatcataatcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtcttatatatcatagaataaaa |
19765248 |
T |
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| Q |
280 |
gcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaagtg----------agtagattaacttacctgaataagtat |
369 |
Q |
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| T |
19765249 |
gcatactgtgctcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaagtgccactctctgagtagattaacttacctgaataagtat |
19765348 |
T |
|
| Q |
370 |
ttaattatatgaataatgctcactttgtttgtaaaaacatatttcaggtgaatttccccgaacatgccgccattcctacatttgataacttaacttacct |
469 |
Q |
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| T |
19765349 |
ttaattatatgaataatgctcactttgtttgtaaaaacatatttcaggtgaatttccccgaacatgccgccattcctacatttgataacttaacttacct |
19765448 |
T |
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| Q |
470 |
gaaaataaattccttgaactaccgttggcgttttttagttgaagtactaaagcactgccctaagcttgaaaaactaatccttaatgaggtttgttaaata |
569 |
Q |
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| T |
19765449 |
gaaaataaattccttgaactaccgttggcattttttagttgaagtactaaagcactgccttaagcttgaaaaactaatccttaatgaggtttgttaaata |
19765548 |
T |
|
| Q |
570 |
tcatattattacaaatttatcttttcacaacacatctttagcttttgttttaatttcatacacattactaacaggctggtggccatggtgcaacaagcga |
669 |
Q |
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| T |
19765549 |
tcatattattacaaatttatcttttcataacacatctttagcttttgatttaatttcatacgcattactaacaggctggtggccatggtgcaacaagcga |
19765648 |
T |
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| Q |
670 |
aacatggagtagaaaagatgataaggaacaatgggtcgaccctaaagttgtcccggaatgtctgtcatcacatttaaaaagttgtgatctttacacattc |
769 |
Q |
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| T |
19765649 |
aacatggagtagaaaagatgataaggaacaatgggtcgaccctaaagttgtcccggaatgtctgtcatcacatttaaaaagttgcgatctttacacattc |
19765748 |
T |
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| Q |
770 |
ttaggccttgaaggagagcttcatctagcatgctacatattgaagaatgcaagagttttggaagagatgatgatatgga |
848 |
Q |
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| T |
19765749 |
ttaggccttgaaggagagcttcatctagcatgctacatattgaagaatgcaagagttttggaagagatgatgatatgga |
19765827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 19764980 - 19765068
Alignment:
| Q |
11 |
gattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaag |
99 |
Q |
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| T |
19764980 |
gattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaag |
19765068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 394430 - 394518
Alignment:
| Q |
11 |
gattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaag |
99 |
Q |
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| T |
394430 |
gattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaag |
394518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 394611 - 394677
Alignment:
| Q |
195 |
atcacattatgtattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtctt |
261 |
Q |
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| T |
394611 |
atcacattatgtatttttgactgtgtctgaaattggtctcttgaatatgatttctttggtttgtctt |
394677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 12196802 - 12196880
Alignment:
| Q |
262 |
atatatcatagaataaaagcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaag |
340 |
Q |
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| T |
12196802 |
atatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaag |
12196880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 12441230 - 12441308
Alignment:
| Q |
262 |
atatatcatagaataaaagcatactgtgctcacctgctcctgaaaccttatggtctgtcccttatatgcttatgtaaag |
340 |
Q |
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|||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12441230 |
atatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaag |
12441308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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