View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16593_low_12 (Length: 224)
Name: NF16593_low_12
Description: NF16593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16593_low_12 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 22363938 - 22363720
Alignment:
| Q |
7 |
aaattctctaattgtcttctgnnnnnnnatttcttatgtcataagttttatatactactctttaccatagtgttaactaaattctat-attgtcttcttg |
105 |
Q |
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| T |
22363938 |
aaattctctaattgtcttctgtttttttatttcttatgtcataagttttatatactactctttaccatagtgttaactaaattctatgattgtcttcttg |
22363839 |
T |
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| Q |
106 |
cttacattttaaaggtttttaatttcattaactaaacaattataattttcttgaatcggtgcaacttgagaaaggaggcattagatagctgatatttcaa |
205 |
Q |
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| T |
22363838 |
cttacattttaaaggtttttaatttcattaactaaacaattataattttcttgaatcggtgcaacttgagaaaggaggcattagatagctgatatttcaa |
22363739 |
T |
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| Q |
206 |
gagaatgtgcaaataacat |
224 |
Q |
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| T |
22363738 |
gagaatgtgcaaataacat |
22363720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 2788140 - 2787988
Alignment:
| Q |
76 |
gtgttaactaaattctat-attgtcttcttgcttacatttt-aaaggtttttaatttcattaactaaacaattataattttcttgaatcggtgc-aactt |
172 |
Q |
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| T |
2788140 |
gtgttatctaaattctatgattgtcttcttgcttgcatttttaaaggtttttaacttcattaactaaagaattgtagttttcttgaatcggtgcaaactt |
2788041 |
T |
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| Q |
173 |
gagaaaggaggcattagatagctgatat-ttcaagagaatgtgcaaataacat |
224 |
Q |
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| T |
2788040 |
gagaaaggaggctttagatagctgagatattcaagagaatgtgcaaataacat |
2787988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 2788251 - 2788199
Alignment:
| Q |
35 |
atttcttatgtcataagttttatatactactctttaccatagtgttaactaaa |
87 |
Q |
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| T |
2788251 |
atttcttttgtcataagctttatatattactcttttacatagtgttaactaaa |
2788199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 23098501 - 23098424
Alignment:
| Q |
117 |
aaggtttttaatttcattaactaaacaattataattttcttgaatcggtgcaa-cttgagaaaggaggcattagatag |
193 |
Q |
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| T |
23098501 |
aaggtttttaatttcattaactcaaaaaatgtagttttctcgaataagggcaaacttgagaaaggaggcattagatag |
23098424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 22679407 - 22679517
Alignment:
| Q |
114 |
ttaaaggtttttaatttcattaactaaacaattataattttcttgaatcggtgcaa-cttgagaaaggaggcattagatagctgata-tttcaagagaat |
211 |
Q |
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| T |
22679407 |
ttaaaggtatttaattttattaagtaaaaagtagtagttttcttgaattagagcaaacttgataaatgaggcattagatagttgaaattttcaagagaag |
22679506 |
T |
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| Q |
212 |
gtgcaaataac |
222 |
Q |
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| T |
22679507 |
gtgcaaataac |
22679517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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